Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4230g00025 ATGATGATGAACCTTTCCACCCTTAAATCTCTTAATGTACGTCTTTTTGTTGTGATGTTTTACATGTTTGATGTAACAGCCAAATCACAAACAAATTACAGCAAGTTTGCAATTCCTGCTGTCATAGCTTTTGGTGATTCAATCTTGGATACTGGGAACAACGATTATATTGAAACCATAATGAAAGCAGATTTCAGACCATATGGGAGGGATTTCTTCGGAGGAAAACCCACAGGAAGGTTTAGCAATGGCAGGATCCCTTCAGACTTTTTAGCTGAAAAGTTTGGAATAAAGGACACTCTGCCACCCTATCTTGATCCAACTCTGGAGACTGAAGACCTCTTAACTGGGGTATCTTTTGCCTCTGCTGGCTCTGGATATGATCCTCTAACACCAGAACTAGCAGCAGTGTTATCAGTAGAGGATCAACTGAATATGTTCAAAGATTACATAGGAAAACTGAAGGCCTATGCAGGGAAAGAAAGGACAGCTTTCATTCTAGCAGAAAGCGTATTTTTTATCAGTATGGGAAGCAATGACGTTTCAGTAACATATTTCATGTCACCATATCGGAGAAATGAGTATAATGTTGAAGAGTACACAAGTATGCTAGTCAATATATGTTCAAATTTTCTTCAGGAACTGTATAAATATGGAGCAAGAAAGATTGGAGTACTGAGCCTATCTCCAATAGGATGTGTGCCACTGCAAAGAACATTAGGGGGAGGTGGAGAAAGGAATTGCGTAGAATCATTAAACCAAGCAGCCATGGTCTTCAACTCCAAGCTTTCTTCTTCAATAGAGGCTCTCAACAAAAGTCTTCCAAAAGCTAGGCTTGTTTACCTTGACAACTATAGTGAACTCAATGAAATTATCCAACACTACGACAAATTTGTCTGGTCTAAGCATTACACGGTATTCAGTCACAAACTAGATTTGAAGTGGGGGATACTGCATGCTGTGGCGTTGGAAATATTGAAGCAGGCATTCTGTGTAATTCTTTCTCCTTAA 1011 0.3937 MMMNLSTLKSLNVRLFVVMFYMFDVTAKSQTNYSKFAIPAVIAFGDSILDTGNNDYIETIMKADFRPYGRDFFGGKPTGRFSNGRIPSDFLAEKFGIKDTLPPYLDPTLETEDLLTGVSFASAGSGYDPLTPELAAVLSVEDQLNMFKDYIGKLKAYAGKERTAFILAESVFFISMGSNDVSVTYFMSPYRRNEYNVEEYTSMLVNICSNFLQELYKYGARKIGVLSLSPIGCVPLQRTLGGGGERNCVESLNQAAMVFNSKLSSSIEALNKSLPKARLVYLDNYSELNEIIQHYDKFVWSKHYTVFSHKLDLKWGILHAVALEILKQAFCVILSP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4230g00025 336 CDD SGNH_plant_lipase_like 39 298 IPR035669 -
Vium4230g00025 336 Pfam GDSL-like Lipase/Acylhydrolase 41 294 IPR001087 GO:0016788
Vium4230g00025 336 PANTHER GDSL ESTERASE/LIPASE EXL3 21 298 - -
Vium4230g00025 336 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 41 52 IPR008265 GO:0006629|GO:0016298
Vium4230g00025 336 Gene3D SGNH hydrolase 27 308 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4230g00025 Vium-Chr4230 189990 191993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4230g00025 37 303 Pollen Coat Proteome AT1G75910 41.852 9.28e-68 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4230g00025 - - gmx:100797172 442.195