Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4230g00023 ATGTTCAAAAACAACATAGGAAACAGTAGATACAGAAGCATGAGTCTTCTCTGTGGAAAGCTTCTTTCTCAATGGCTTATAGTCATTCTCATGTTTCAATATGTTTCTGCACTGATCCTACCCAACAATGAAACTGTGCCAGCAGTCATTGTCTTTGGGGACTCCATAGTAGATACCGGAAACAACAACTATATCTCCACTCTTGTCAAATGCAATTTCCCACCATATGGAAGAGATTTTGCCGAAGGAAATCATCCATCTGGGAGGTTCAGCAATGGCTTAGTCCCATCAGATATTATTGCTGCAAAATTTGGAGTCAAGAAGTTCTTACCTCCTTATCTCGATCCAACTTTGCAGCTTCAAGATCTCCTCACTGGTGTAAGCTTTGCCTCAGGTGGGGCCGGATATGATCCTCTAACAGCCGAATTAGTGTCTGTGATGTCATTGTCAGATCAATTAATCATGTTCAAGGAGTATATAGACAAGATTAAAGATGCAGTTGGAGGAAACAGAACCACACAAATAGTGTCTAAGAGCGTATACATAGTGTGCATAGGAAGTGATGACATTGCCAATACTTACACTCAATCACCATTTAGGCGTGCTGAGTATGATATTCCTTCATACACTGATCTAATGGCCTCTGAAGCTTCAAAGTTCTTTGAGACACTTTATGGAATGGGAGCTAGAAGGATCGGAGTGTTTGGTATACCAGCTATAGGGTGTGTGCCTTCACAAAGAACAATGGCTGGAGGCTTAGATAGAGCATGTGTAGAATCTTCTAATGAAGCGGCAATGCTCTTCAATTCGAAGCTTTCTTCTCAAATGGATGCACTTGGAAAGAAGTTACCAGACGCTAGACTTGTTTACCTTGATTCTTACAATGGATTGCTAAAAATGATTAGAGATCCTGCTAAATATGGTTTCGAAGTGACAGAGAAAGGATGCTGCGGCACAGGGAATATAGAAGTGAGCATTTTGTGCAACCGCTACATCGTAAACACATGCTCTAACTCTTCTGACTACATATTTTGGGACAGCTATCATCCAACAGAGCAGGCTTACTATGTTCTTAGTACTATAACACTTGATGAAAAAGTTAAGCAGTTCTTTTAA 1116 0.405 MFKNNIGNSRYRSMSLLCGKLLSQWLIVILMFQYVSALILPNNETVPAVIVFGDSIVDTGNNNYISTLVKCNFPPYGRDFAEGNHPSGRFSNGLVPSDIIAAKFGVKKFLPPYLDPTLQLQDLLTGVSFASGGAGYDPLTAELVSVMSLSDQLIMFKEYIDKIKDAVGGNRTTQIVSKSVYIVCIGSDDIANTYTQSPFRRAEYDIPSYTDLMASEASKFFETLYGMGARRIGVFGIPAIGCVPSQRTMAGGLDRACVESSNEAAMLFNSKLSSQMDALGKKLPDARLVYLDSYNGLLKMIRDPAKYGFEVTEKGCCGTGNIEVSILCNRYIVNTCSNSSDYIFWDSYHPTEQAYYVLSTITLDEKVKQFF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4230g00023 371 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 49 60 IPR008265 GO:0006629|GO:0016298
Vium4230g00023 371 Gene3D SGNH hydrolase 38 366 IPR036514 -
Vium4230g00023 371 Pfam GDSL-like Lipase/Acylhydrolase 49 357 IPR001087 GO:0016788
Vium4230g00023 371 PANTHER GDSL ESTERASE/LIPASE EXL3 32 359 - -
Vium4230g00023 371 FunFam GDSL esterase/lipase APG 39 367 - -
Vium4230g00023 371 CDD SGNH_plant_lipase_like 47 359 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4230g00023 Vium-Chr4230 184536 186380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4230g00023 43 359 Pollen Coat Proteome AT1G75910 39.688 1.96e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4230g00023 - - vun:114175459 694.115