Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4230g00016 ATGGCTGCCAAGTGCAGACACGTTTTTGATAGATTACAGAGTTTGAGTTTTTGCACTTACTGGAAAAAAAGCTCCACACCAACAGGCAGACGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTCCAGTATGCCAGTACTCAATGTCTTTCATCCTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCGATGCTAGCCATCTTGATTGGTCTGCTCACTTTCCTCACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTTAACAGCTTGGCATACGACCTGCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTCTGAATTCTACTTCTGAAATAACCACTGCTCAGGTTAAGCTGTCGCAGTATGTGATCAGAAGCCACACCACCAACCTTCCCACTCAAGCAGACCAAGTTGAGATGTACGACGCGATGAGAGCTGTGACGTGGGCACTGTTTGCCAGTAAAAAAGCTCTGAATTCAATAACTGTCAAATACAAGAATGGATTTGTGCAAGCATTCCATAGAGACCTGAAGGAAAACAACACCTTTTACATATATTCTGATCTTGCAAATTACTCCATGGCTGCCAGTGGCCACAATGAGATCAATTCGCTTTCATCGAACGAAGCTTGGAATGATAAAGACATTCACGGAAACAAGTCTGCAATTTGGTATCGGGAACCGCTTGATCCTGTCAGTGGAGAGAAGATTGGAAAAGTAATGCCAATTGCACCAGAAGACTCCATCAATATAGCAGGCATCTCCCAAGTACCTGATGGTGTAGCTTCGTGGCATGTTGCTGTTAGCAAGTTTACAGATTCACCATTGCTTTCTGCGGCATTGCCAGTTTGGGACTCTTCAAATAAAAGCATTGTGGCAGTTGTGGGTGTCACAACTGCACTTTATAGTGTGGGGCAGCTCATGCAAGAGCTGGTTGAGTTGCACAGTGGTCACATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAATGCACCTCTACTGTCAAATTCTACAAGGCCTCCGAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCTCGGTGGCTACAGAAAACCTATGGCAACAATTTCCCTCAAAGTCATGAACTTCATGTAGAGAATGTCAAGCTAGGTCCCCAGCAATATTACATCGACTCATTCTTCCTTAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCCAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTTATATCTGCATCGTTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACAAATGGAGTGTCAAAGGAAATGAAACTAAGAGCAGAACTCATCAGCCACCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCTGCAGTAATCGGGTTACTCGACATTCTTATATCTGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGTTCAACTGCCCTGCTTCGTCTACTTAATAACATCTTGGACCTGAGCAAGGTTGAATCTGGAAAATTGGTCCTAGAAGATGCAGAATTTGATTTGGGGCGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTCTAGACTTGTCTGATGATATGCCAAAGCTAGTTCGAGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATGCTTGCAGTGATGATACGAATTTTCCACTTGAGCAAAAGAAATCACGGTGTTCACAGAAGAACAGAGCAAAACAACATGAAAACCATGCAAAGAGGATTTCCAATAGAGATAACAAAATAGTACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGAATCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACGGGTCTCGGTCTTTGCATTGTCAGAACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGCGATTATACTTGCGTCTGAGTGCACCTCTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAAGGCTTAGTGGTACTTCTTGCACTACATGGCAGTATGGGTAGATCTGTTACATCTAAGTGGTTACAGAAAAATGGTGTAGTGTCTATGGAGGCATCAGAATGGAATGGATTAACACAAATCCTTAGGGTACTCTTTCATGCTAGAAGTTCAGCTCATAATAATGGTTTCGATGCAAATTATTCAGTGCATGAAAATTTAAAGTCGAAACTACTGAGCATACAGGAATTGAGGAACCCAGTTTTTGTGATTGCTGTTGACATTGGACTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTCAATTTCCTTCACAAATACTTTGGGAGAGCGAAATTCGTGTGGATACTAAAGCATGACTCCTCCAATACCATAAAGATGGAGCTTTGCAGGAAAGGGCATACACTGACAGTGAACAAACCCCTCTACAAAACAAAAATGCTTCATATTTTGGAAACCATTACAAAGGAAAGAAGTGATGAGCTACAAAAGAAAAATATGACTACTCCCAGATCTACTACAGTGAAAGAGGGTTATTTGCATGAGAGTCTTGAGATTGATTATACTCAATGTGATGTTGCAAGCTCGGATGGTTCTGACATTTCTGAAACGGGAGGTTCTAATCCTGTTCGTGAAAGTGGAGATAAACAAAGAGAGAAGGTAGTGAGATCTGAATCATCATCACAACACAAGATAAATAACTTAGCTGGATTAGCAAATGGATATAAGGAAGATAATAGTCCTTGGAAGGAAGAGTTATGTGGGAGCAGCCTCAACTCTAACAATGTCACTGCGAATGGCACACCAAAATCATCCTCCACTAAACAAGCATTGTTTGCGAAAGGCAGTCAATGTGAAGATTCTGAATATGGCGAAACAGGAAGTGGCAGTAGCTCGAGAAGAACAGTGAGTGGAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGACACACCAGTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCATTGTTGTAGCTGTAGGTGATGGACAACAAGCAGTGGATGCTCTGAATGGCATGCCTGGTGTTGAAGATTGTAGAAGGGAGTCTATCATGAAAGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCAGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGACAACAAAAGCAATCAGGAAATCAGAAATGGGAACTGGTTTGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCTTAGAGGTTGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACAAGAAGGACATCTCCGACTTTTGTTTAA 3705 0.4159 MAAKCRHVFDRLQSLSFCTYWKKSSTPTGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRSHTTNLPTQADQVEMYDAMRAVTWALFASKKALNSITVKYKNGFVQAFHRDLKENNTFYIYSDLANYSMAASGHNEINSLSSNEAWNDKDIHGNKSAIWYREPLDPVSGEKIGKVMPIAPEDSINIAGISQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMQELVELHSGHMYLTSQEGYLLATSTNAPLLSNSTRPPKLKMAVDCENEVIREGARWLQKTYGNNFPQSHELHVENVKLGPQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNACSDDTNFPLEQKKSRCSQKNRAKQHENHAKRISNRDNKIVLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPLDATEQHCQVDFANKGLVVLLALHGSMGRSVTSKWLQKNGVVSMEASEWNGLTQILRVLFHARSSAHNNGFDANYSVHENLKSKLLSIQELRNPVFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILKHDSSNTIKMELCRKGHTLTVNKPLYKTKMLHILETITKERSDELQKKNMTTPRSTTVKEGYLHESLEIDYTQCDVASSDGSDISETGGSNPVRESGDKQREKVVRSESSSQHKINNLAGLANGYKEDNSPWKEELCGSSLNSNNVTANGTPKSSSTKQALFAKGSQCEDSEYGETGSGSSSRRTVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGQQAVDALNGMPGVEDCRRESIMKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYETTKAIRKSEMGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTSPTFV 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4230g00016 1234 PANTHER TWO-COMPONENT HISTIDINE KINASE 42 755 - -
Vium4230g00016 1234 SMART REC_2 1079 1222 IPR001789 GO:0000160
Vium4230g00016 1234 SUPERFAMILY CheY-like 1077 1228 IPR011006 -
Vium4230g00016 1234 SMART HKATPase_4 599 751 IPR003594 -
Vium4230g00016 1234 Gene3D - 1061 1225 - -
Vium4230g00016 1234 Pfam Response regulator receiver domain 1081 1219 IPR001789 GO:0000160
Vium4230g00016 1234 MobiDBLite consensus disorder prediction 961 1010 - -
Vium4230g00016 1234 ProSiteProfiles Histidine kinase domain profile. 493 751 IPR005467 -
Vium4230g00016 1234 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 473 553 IPR036097 GO:0000155|GO:0007165
Vium4230g00016 1234 Gene3D - 474 553 - -
Vium4230g00016 1234 Pfam His Kinase A (phospho-acceptor) domain 487 552 IPR003661 GO:0000155|GO:0007165
Vium4230g00016 1234 SMART HisKA_10 486 552 IPR003661 GO:0000155|GO:0007165
Vium4230g00016 1234 ProSiteProfiles Response regulatory domain profile. 1080 1226 IPR001789 GO:0000160
Vium4230g00016 1234 MobiDBLite consensus disorder prediction 1055 1071 - -
Vium4230g00016 1234 MobiDBLite consensus disorder prediction 1031 1071 - -
Vium4230g00016 1234 CDD HisKA 487 548 IPR003661 GO:0000155|GO:0007165
Vium4230g00016 1234 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 599 749 IPR003594 -
Vium4230g00016 1234 CDD REC_hyHK_CKI1_RcsC-like 1081 1222 - -
Vium4230g00016 1234 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 541 748 IPR036890 -
Vium4230g00016 1234 MobiDBLite consensus disorder prediction 961 978 - -
Vium4230g00016 1234 FunFam Histidine kinase 1-like protein 474 553 - -
Vium4230g00016 1234 PRINTS Bacterial sensor protein C-terminal signature 694 704 IPR004358 GO:0016310|GO:0016772
Vium4230g00016 1234 PRINTS Bacterial sensor protein C-terminal signature 711 729 IPR004358 GO:0016310|GO:0016772
Vium4230g00016 1234 PRINTS Bacterial sensor protein C-terminal signature 676 690 IPR004358 GO:0016310|GO:0016772
Vium4230g00016 1234 PRINTS Bacterial sensor protein C-terminal signature 735 748 IPR004358 GO:0016310|GO:0016772
Vium4230g00016 1234 MobiDBLite consensus disorder prediction 1031 1048 - -
Vium4230g00016 1234 MobiDBLite consensus disorder prediction 979 993 - -
Vium4230g00016 1234 Gene3D - 554 752 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4230g00016 Vium-Chr4230 136513 142933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4230g00016 4 1227 Histidine Kinase Gene Family AT2G17820 63.533 0.0 1546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4230g00016 HATPase_c 2.8e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4230g00016 - - gmx:100776856 2182.14