Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4230g00012 ATGGGTTCTATTGGAATCAAAAGCTCGGGATCCGAGGTTGTCACCATTGATGTTCATGCAGCCAAGGGTTTGATCCAGACCGGTCATGTTTATCTCGATGTCAGGACGGTGGAAGAGTTTCAGAAAGGTCATGTGGATGCTGAGAAGATAATTAACATTCCGTACATGTTTAATACACCAGAAGGTAGGGTGAAGAATCCGGAGTTTCTGAAGGAGGTTTTATCAGCGTGCAAGAAAGAAGATCGCATCATCGTGGGTTGTCAAAGTGGAGTGAGATCTGTGTATGCAACCAGTGATCTTCTGACGGAGGGTTTTAAAGATGTGAGGAACATGGGAGGAGGATATCTTGACTGGGTTAAAAATCAATTTCCACTGAAAATACCTTTGAATTTGGTTAAAGACGAAGTTCCACTGAAAGCTCCTCTGGGTTTGGTTATAGATGAAGTTACAGTGAAAGAACCTTTGGACTTGCTTAAAAACGAATTACCATAA 492 0.4207 MGSIGIKSSGSEVVTIDVHAAKGLIQTGHVYLDVRTVEEFQKGHVDAEKIINIPYMFNTPEGRVKNPEFLKEVLSACKKEDRIIVGCQSGVRSVYATSDLLTEGFKDVRNMGGGYLDWVKNQFPLKIPLNLVKDEVPLKAPLGLVIDEVTVKEPLDLLKNELP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4230g00012 163 Gene3D - 6 126 IPR036873 -
Vium4230g00012 163 ProSiteProfiles Rhodanese domain profile. 25 127 IPR001763 -
Vium4230g00012 163 SMART rhod_4 16 124 IPR001763 -
Vium4230g00012 163 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 12 125 IPR036873 -
Vium4230g00012 163 PANTHER THIOSULFATE SULFURTRANSFERASE 18 7 127 IPR044684 GO:0003824
Vium4230g00012 163 CDD RHOD 20 119 - -
Vium4230g00012 163 Pfam Rhodanese-like domain 22 120 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4230g00012 Vium-Chr4230 99665 102252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4230g00012 3 125 Sulfurtransferasese or Rhodanese AT5G66170 57.724 1.88e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4230g00012 - K15692 pvu:PHAVU_003G264200g 281.182