Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4230g00004 ATGGCGGAAGAAAGATTCACGGGCGTTGTGCAGTGGTTCAACAATGGAAAAGGCTTCGGCTTCATCAAGCCTGACGACGGCGGCGAGGATCTCTTCGTCCATCAGTCCTCCATCAGATCCGATGGTTACCGCACTCTCCTCGAGGGCGATCGCGTTGAGTTCGCTATCGCCACCGGCGACAACGACAAGACTAAGGCCGTTGACGTCACCGGAATCGACGGCGCCCCTCTCCAGCCCCGTGCCGCCTCCGGCAATCGTGGCTCTGGGTACGGATTTGGCTCCAGGCGGAATGGCGCGGGCGCTGGCGGTGCTGCGTGCTATCAGTGTGGCGATTTCGGCCATCTGGCTAGGGACTGCAACCGAAGCAGCAATTCCGGCAGCGGAGGCGGTGGTGGGTGCTTTGTTTGCGGCGGGTTTGGTCACCTCGCGAGGGACTGCGTGCGCGGAGGCAACGGCGGCGGAGGAGGAGGAGGCGGGGGCGGAGGCGGCTCTTGCTTTAGGTGTGGCGGATTTGGACACATGGCGAGGGATTGCGCGACTGCGAAGAGCGTCGGTGGTGGTGGTGGTGGTGGTAGTGGTGGTGGTTGTTTTCGGTGTGGGGAGGTAGGTCATTTGGCTAGGGATTGCGGCATTGAAGGAGGAAGGTACGGCGGTGGTAACAGTGGTGGTGGTGGTGGTGGTGGTGCTGGGAAGAGCACCTGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGTGTTGAGGCTTCCGTGTGA 759 0.6153 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGIDGAPLQPRAASGNRGSGYGFGSRRNGAGAGGAACYQCGDFGHLARDCNRSSNSGSGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGGGGGGSCFRCGGFGHMARDCATAKSVGGGGGGGSGGGCFRCGEVGHLARDCGIEGGRYGGGNSGGGGGGGAGKSTCFNCGKPGHFARECVEASV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4230g00004 252 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Vium4230g00004 252 PANTHER COLD SHOCK DOMAIN PROTEIN 2 185 249 - -
Vium4230g00004 252 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 Gene3D - 191 217 - -
Vium4230g00004 252 Gene3D - 226 251 - -
Vium4230g00004 252 Gene3D - 160 186 - -
Vium4230g00004 252 SMART c2hcfinal6 233 249 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 SMART c2hcfinal6 195 211 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Vium4230g00004 252 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Vium4230g00004 252 SUPERFAMILY Retrovirus zinc finger-like domains 217 247 IPR036875 GO:0003676|GO:0008270
Vium4230g00004 252 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Vium4230g00004 252 ProSiteProfiles Zinc finger CCHC-type profile. 196 209 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Vium4230g00004 252 Gene3D - 103 154 - -
Vium4230g00004 252 ProSiteProfiles Zinc finger CCHC-type profile. 234 247 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 SUPERFAMILY Retrovirus zinc finger-like domains 99 148 IPR036875 GO:0003676|GO:0008270
Vium4230g00004 252 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Vium4230g00004 252 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Vium4230g00004 252 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Vium4230g00004 252 Gene3D - 1 82 IPR012340 -
Vium4230g00004 252 ProSiteProfiles Zinc finger CCHC-type profile. 165 178 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 PRINTS Eggshell protein signature 217 235 - -
Vium4230g00004 252 PRINTS Eggshell protein signature 98 109 - -
Vium4230g00004 252 PRINTS Eggshell protein signature 158 173 - -
Vium4230g00004 252 PRINTS Eggshell protein signature 185 195 - -
Vium4230g00004 252 SMART csp_8 7 72 IPR011129 GO:0003676
Vium4230g00004 252 Pfam Zinc knuckle 195 209 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 Pfam Zinc knuckle 233 247 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Vium4230g00004 252 SUPERFAMILY Retrovirus zinc finger-like domains 156 210 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4230g00004 Vium-Chr4230 34038 35227 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vium4230g00004 CSD 1.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4230g00004 K09250 - gmx:100806783 360.533