Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium422g00003 CTGTCATCAGCTTTTTGTACTTATTTTGTAGGTCATATTGCCCGAAAGATATATGCTGCTAAAAGGGAGACAGCAGCGGCTATCTCCATTCAGAAATATATTCGGATGTGGCTTACAAGGCATGCTCACTTAAAACTGTATTTTTCTGCTATTATCATGCAATCTCATGTTCGAGGTTTTGTGACTCGCCAAAGATTCTTACATGCAAAAGAACATAGCGCTGCTACTTTTGTTCAGGCCTATTGGAGGATGTCCAAGGTTAGGTCATCTTTCCTACGCTATCAAACTTCAGTTGTGGCAATACAATGCCTTTGGCGGTGCAGACAAGCAAAAAGAGAGTTACGGAGACTTAAACAAGAGGCAAATGAAGCTGGTGCTCTTCGATTAGCAAAGAATAAACTGGAGAAGCAAATGGAAGATCTCTCATGGCGTTTACATCTTGAAAAGAAAATAAGGGTTTCCAATGAAGAGGCTAAAAAAATAGAGATTTCCAAACTTCAAAAGATGTTAGAAGCTTTGAATCTTGAATTGGATGCTGCTAAATTGGCAAAAATTAACGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTAGAATTATCAGTAAAGGAAAAGTCCGCTTTGAAACGGGAGCTAGTAGCGGTGGATGAATTGCGAAAGGAAAATGCTTTATTAAAGGTTTCATTGGATGCATTTGAAAGGAAGTACAAGACCTTAGAGCTTGAGCTTATGAATGCTCAAAAAGGCCGGGATGAAACCATGGAGAAACTGAGGGAGTTTGAACAGAAGTGTTCTCAACTCGAGCAAAATGAAGAAAGGCTTGAGGAAAAGTTAAAGAGTTTAGAGAATGAAAATCATGTGCTTCGTCAGAAAGCATTAAGTACCCCTTTTAAGAGTAACCGTCCAGGTTTTGCGAAGTCAGTGTCAGAAAAATACTCTACTGCAATTACCTCTCACACTGATCGAAAGACCATATTTGAGTCACCCACGCCCACAAAACTTATTGCCCCTTTTACAGTAGGCTTGTCAGACTCTCGTCGATCTAAGTTAACAGCAGAGAAGCACCAGGCCTATTGGAGGATGTCCAAGGTTAGGTCATCTTTCCTACGCTATCAAACTTCAGTTGTGGCAATACAATGCCTTTGGCGGTGCAGACAAGCAAAAAGAGAGTTACGGAGACTTAAACAAGAGGCAAATGAAGCTGGTGCTCTTCGATTAGCAAAGAATAAACTGGAGAAGCAAATGGAAGATCTCTCATGGCGTTTACATCTTGAAAAGAAAATAAGGGTTTCCAATGAAGAGGCTAAAAAAATAGAGATTTCCAAACTTCAAAAGATGTTAGAAGCTTTGAATCTTGAATTGGATGCTGCTAAATTGGCAAAAATTAACGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTAGAATTATCAGTAAAGGAAAAGTCCGCTTTGAAACGGGAGCTAGTAGCGGTGGATGAATTGCGAAAGGAAAATGCTTTATTAAAGGTTTCATTGGATGCATTTGAAAGGAAGTACAAGACCTTAGAGCTTGAGCTTATGAATGCTCAAAAAGGCCGGGATGAAACCATGGAGAAACTGAGGGAGTTTGAACAGAAGTGTTCTCAACTCGAGCAAAATGAAGAAAGGCTTGAGGAAAAGTTAAAGAGTTTAGAGAATGAAAATCATGTGCTTCGTCAGAAAGCATTAAGTACCCCTTTTAAGAGTAACCGTCCAGGTTTTGCGAAGTCAGTGTCAGAAAAATACTCTACTGCAATTACCTCTCACACTGATCGAAAGACCATATTTGAGTCACCCACGCCCACAAAACTTATTGCCCCTTTTACAGTAGGCTTGTCAGACTCTCGTCGATCTAAGTTAACAGCAGAGAAGCACCAGGATAACTATGAATTCCTCTCCAAGTGTATAAAAGAAAATTTGGGATTTAAAAATGGTAAACCTATTGCTGCTCGTATTATATATAAATGTCTGCTTCATTGGCATTCATTTGAAAATGAGCGCACAGCGATTTTTGATTCCATCATCGAAGGCATAAATGAGGTTCTAAAGGATAGGGAGGATGACATTATCCTGCCATATTGGCTGTCCAATACCTCTGCGCTTCTATGCCTTTTACAAAGGAACTTACGGTCAAATGGTTTTTTAACTGCCACTGCTCAGCGTTATCCTGGATCTTCTGGTTTAACCAGCCGGACAGGACATGGACCAAAATCTCCGTTGCAATTTATAGGGTATGATGATGGTGTATCACATGTGGAGGCAAGATATCCTGCTATACTTTTTAAACAACAGCTAACTGCTTGTGTAGAGAAGATTTTTGGTCTGTTGCGTGACAATTTGAAAAAAGAACTTTCTCCACTTCTGGGATCATGTATTCAGTCACCCAAAACAGGACGAGGAGTGCAAGGGGCAAAATCGTCTAGATCTCCTGGTGGGATTCCCCAACCATCATCTGGTGGTCAATGGGATAACATTGTCAAATTTTTGGATTCTCTCATGAGCAAACTTCGTGGAAATCATGTCCCATCCTTCTTCATCCGTAAACTAGTTACCCAAGTGTTTTCCTTCATCAATATTACACTCTTCAACAGTCTTCTCTTGCGTCGGGAATGTTGCACTTTCTCAAATGGTGAATATGTGAAGTCTGGTCTAGCAGAACTGGAGAAATGGATAGTTAATGCAAAGGAAGAGTATGCAGGGACATCCTGGCACGAGCTCAATTACATACGACAAGCTGTTGGGTTCTTGGTTATACATCAGAAAAGAAAGAAATCTTTGGAAGAGATTCGGCAAGATCTTTGTCCGGCATTGACAGTGAGGCAAATCTATCGAATCAGTACAATGTACTGGGATGACAAGTATGGAACCCAAAGTGTGTCCAATGAGGTGGTTAGTGTAATGAGAGAAATTGTCAGCAAGGACAATCAGAACCTGACATCAAATTCTTTCTTATTGGATGACGATCTGAGCATTCCTTTCTCTGCTGAAGACATAGATATGGCTATCCCTGCCATAGATCTTGATGAGATTCATCTTCCAGAATTTGTGTCCGAATATTCCTGTGCTCAGTTTCTTATTTCACATCAGAAGTAA 3114 0.4021 LSSAFCTYFVGHIARKIYAAKRETAAAISIQKYIRMWLTRHAHLKLYFSAIIMQSHVRGFVTRQRFLHAKEHSAATFVQAYWRMSKVRSSFLRYQTSVVAIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQMEDLSWRLHLEKKIRVSNEEAKKIEISKLQKMLEALNLELDAAKLAKINECNKNAVLQNQLELSVKEKSALKRELVAVDELRKENALLKVSLDAFERKYKTLELELMNAQKGRDETMEKLREFEQKCSQLEQNEERLEEKLKSLENENHVLRQKALSTPFKSNRPGFAKSVSEKYSTAITSHTDRKTIFESPTPTKLIAPFTVGLSDSRRSKLTAEKHQAYWRMSKVRSSFLRYQTSVVAIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQMEDLSWRLHLEKKIRVSNEEAKKIEISKLQKMLEALNLELDAAKLAKINECNKNAVLQNQLELSVKEKSALKRELVAVDELRKENALLKVSLDAFERKYKTLELELMNAQKGRDETMEKLREFEQKCSQLEQNEERLEEKLKSLENENHVLRQKALSTPFKSNRPGFAKSVSEKYSTAITSHTDRKTIFESPTPTKLIAPFTVGLSDSRRSKLTAEKHQDNYEFLSKCIKENLGFKNGKPIAARIIYKCLLHWHSFENERTAIFDSIIEGINEVLKDREDDIILPYWLSNTSALLCLLQRNLRSNGFLTATAQRYPGSSGLTSRTGHGPKSPLQFIGYDDGVSHVEARYPAILFKQQLTACVEKIFGLLRDNLKKELSPLLGSCIQSPKTGRGVQGAKSSRSPGGIPQPSSGGQWDNIVKFLDSLMSKLRGNHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNAKEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVSVMREIVSKDNQNLTSNSFLLDDDLSIPFSAEDIDMAIPAIDLDEIHLPEFVSEYSCAQFLISHQK 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium422g00003 1037 MobiDBLite consensus disorder prediction 802 826 - -
Vium422g00003 1037 ProSiteProfiles IQ motif profile. 371 400 IPR000048 GO:0005515
Vium422g00003 1037 SMART DIL_2 855 962 IPR002710 -
Vium422g00003 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 398 IPR027417 -
Vium422g00003 1037 ProSiteProfiles Dilute domain profile. 679 980 IPR002710 -
Vium422g00003 1037 Pfam DIL domain 856 959 IPR002710 -
Vium422g00003 1037 Coils Coil 156 183 - -
Vium422g00003 1037 Pfam IQ calmodulin-binding motif 72 91 IPR000048 GO:0005515
Vium422g00003 1037 Pfam IQ calmodulin-binding motif 24 42 IPR000048 GO:0005515
Vium422g00003 1037 Pfam IQ calmodulin-binding motif 49 66 IPR000048 GO:0005515
Vium422g00003 1037 Gene3D - 351 399 - -
Vium422g00003 1037 Gene3D - 73 122 - -
Vium422g00003 1037 Gene3D - 20 72 - -
Vium422g00003 1037 CDD MyosinXI_CBD 630 1003 IPR037975 GO:0007015
Vium422g00003 1037 Coils Coil 191 211 - -
Vium422g00003 1037 Coils Coil 433 460 - -
Vium422g00003 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 121 IPR027417 -
Vium422g00003 1037 Coils Coil 492 568 - -
Vium422g00003 1037 SMART iq_5 22 44 IPR000048 GO:0005515
Vium422g00003 1037 SMART iq_5 70 92 IPR000048 GO:0005515
Vium422g00003 1037 SMART iq_5 370 392 IPR000048 GO:0005515
Vium422g00003 1037 SMART iq_5 45 67 IPR000048 GO:0005515
Vium422g00003 1037 SMART iq_5 93 115 IPR000048 GO:0005515
Vium422g00003 1037 ProSiteProfiles IQ motif profile. 49 75 IPR000048 GO:0005515
Vium422g00003 1037 Coils Coil 215 291 - -
Vium422g00003 1037 Coils Coil 107 137 - -
Vium422g00003 1037 Coils Coil 468 488 - -
Vium422g00003 1037 Coils Coil 384 414 - -
Vium422g00003 1037 ProSiteProfiles IQ motif profile. 94 123 IPR000048 GO:0005515
Vium422g00003 1037 PANTHER DILUTE DOMAIN-CONTAINING PROTEIN YPR089W 236 1007 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium422g00003 Vium-Chr422 20313 40375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium422g00003 8 383 Myosins gene family AT4G33200 51.302 8.75e-108 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium422g00003 K10357 - gmx:100790815 1220.68