Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4227g00004 ATGGAAGAAATTANACTCGCCAAGTTGAAGGCCAAGACAAGGATTTTGACAAACACGTGCAACCCCGTTTGGAATCAGGAGTTTTGTTTCAGGGTGCATGATGCTGAGGACGTGCTCCTTCTGTCTGTTGTTAGTCATGTGAATGAGTGCAGAGTGACCAATGGTTATGTCGGTTTCGTGGGTGAGGTTCGGATACCAGTAGGCTCAATTTCTTTTGAGCATACCTTGCTGCCCACTTGGTTTTCTCTTCAAAGCCCCAGGAGTGGGAAATTTTTCAATAAATATTGTGGAAAAATTCTCCTTACTGTTTATCTTCGTGGTAAAGGTCGTGCTTCTTTTACCAAGCATAAGCATTCTCCAAATCCGACCCTTGCAGTTGAGAACTCGAGGGAATTGGAAGGTCATCACAGTTCATGTCGGGCACCTTGTGATAAAATGGGTGTAGGCAAACTGTTGAGGGTTATTGCTAATGGTCTGCATAAGATTTTGAAAAAGAAAGAAGGAAACTCTAAGCCCGGGGATTCTTCAGAACAATCCACATTATTATCTGATTCTGAAGTTAGTGTTCATGAAAATTCACCTACTTGTAGCTTTGAAGAAGCCCTTGCACAAATGGAATCAAGAGATAACAAACCTGAAATGCCTGAAAATTTGTCGGGCGGTGTTCTAGTAGATCAGATTTATTTATTCTCTCCATATGACCTTAATTTGTTTCTTTTTGCACCCAAGTCTCAGTTTCGTAAAGATTTGGCCGAGCTGCAGGGAATAACAAATGTGCAAGAGGGACCTTGGACATGGAAAAATGGAGATATGTCTAGTTTAACACGAGTAGTTACTTATACGAAAGCTGCAACAAAATTGGTTAAGGAAGTTGGTGCCACTGAGGAGCAAACGTACATTAGAGTGTGTAGAAAGGAATTTGCTATACTCTGTAGCATAAGTACACCTGAAGCTCCATATGGTAATACATTTAGGATTGAATTGCTTTACAAGATAATGCCTGGTGAAGAGGTACCTTCAGGAGAGGAATCCTCCCATCTTTCTGTGTCATGGGGCATTGTCTTCCTCCAAAGCACAATGATGAAAGGCATGATAGAAAGTGGAGCAAGACAGGGATTGAAGGAGAGTTTTAGCCAGTTCTCCCAAAAACTAGCGCAGAATTTTAAGGTTCAAGATAAGGCAAATTTTTCAGACAAGGAACATTTTTTGGCAACTTTGCAAACTGAAGACCAGTGGCATTGGTGGCAGGAAGTTTCATACTTTTGTAATTTCACTGTGGTTTCCACCTTTTTCATGTGTTTGTATGTGATGGTGCATATTTTTTATTGTGGTCCAAGTCTACCTCAGGGCTTGGAATTTGGGGGGCTTGAATTGCCAGATAGTTTTGGGGAACTCATTATAGGTGGAGTTTTATCCATCCAGTTGCAGCGTGTTTACAATATGCTGTCTCACTTTGTTCAAGCAAGATTTCAAATGGGAACTGACCATGGCCTCAAAGCTCATGGTGTTGGATGGGTTCTTACAGTGGCTTTAATTGAGGGGGTTGACTTGGCTTCCTTGGAATCAGAAAGGGTGTCAGATCCCTATGTAGTTTTCACCTGTAATGCACAAACAAGATCAAGCTCTGTCAAGCTTCAAACGTCGAATCCTCAATGGAATGAAATATTAGAGTTTGAAGCTATGGAAGAACCACCATCAGTTTTGGATGTGGAAGTGTTTGATTTTGATGGTCCATTTGACCGGGATGTTTCACTTGGACATGCTGAGATCAATTTCCTGAAGCACACATCAACTGAGTTGGCAGACATGTGGCTTTTGCTCGAAGGAAAACTTGCTCAATCTTCTCAGTCAAAGTTGCACCTGAGAATTTTCTTGGACAATAATAAAGGAGTTGAGACAATCAAGGAATATTTGGGGAAGATGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTAGATCACCACAAAGGAGTTCTACATTCCAGAAATTGTTTTCATTGCCTCCGGAAGAATTTCTCATAAAAGATTTAACTTGTTACCTCAAGAGAAAAATGCCTTTACAGGGTCGGCTGTTTCTTTCAGCAAGGATTCTGGGTTTTTATGCCAATTTCTTTGGACACAAAACCAAATTTTTCTTCCTTTGGGAAGACATTGAAGACATACAAGTGCTTCCTCCATCGTTGGCAACATTAGGAAGCCCTATATTGGTCATAATCCTGCGAAGTGGTCGGGGTATTGATGCAAGGCACGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTTCTTCATTTGGTGCTGCCTGCAGAACGATAAAGGCCTTGTGGAGAACAAGAATTCTGAACCTCTATCAGAAAGATCAAATTACAGAAGAACATGAAGATCAAGAAGGCTTTGTAATTCCAGAAGACTCTGCATCTATCTTAGAGAATAAAGCAAACATGTCCAGAATCTTTTCTGCAGAACTACCAATCAGGATGATATCTGTGATGGGAATTTTTGCTGGAGGAACCCTGGAGCATAAAATTATGCAGAGAAAAGGATGTATGAACTATGAAACTACCGCGTGGGAGCTCATAAAACCTGAGGTGTTCGAGAGGTGTGTTTCTTACCAATTCAATCGACAAGTATCAACTTTTGGAGGTGAAGTCACAAGCACACAGCAAAAATCTCCAAATGCAGACACTGGAGGGTTGACTGTCGTTGAAGTTATGGCTCTTCATGGTGTCCCTTTTGCTAATCACTTTCATATTCATTTTAGGTTCGAAATTGAGCCATCATCTCTTGGTGAACGTGCTTGCAAGTTTGATGCTTACATTAGTGTTAGGTGGCTTAAGAGCTCCAAGTTTCAGAAAAGGATCAACAGGAACATAATATCCAAGTTTAAGGTTCGACTGAAGGAAATATTTGAATTGGTTCAGGAAGAGATTTTGATCATGTCTCAGAACTCAAATGAATAA 2976 0.4066 MEEIXLAKLKAKTRILTNTCNPVWNQEFCFRVHDAEDVLLLSVVSHVNECRVTNGYVGFVGEVRIPVGSISFEHTLLPTWFSLQSPRSGKFFNKYCGKILLTVYLRGKGRASFTKHKHSPNPTLAVENSRELEGHHSSCRAPCDKMGVGKLLRVIANGLHKILKKKEGNSKPGDSSEQSTLLSDSEVSVHENSPTCSFEEALAQMESRDNKPEMPENLSGGVLVDQIYLFSPYDLNLFLFAPKSQFRKDLAELQGITNVQEGPWTWKNGDMSSLTRVVTYTKAATKLVKEVGATEEQTYIRVCRKEFAILCSISTPEAPYGNTFRIELLYKIMPGEEVPSGEESSHLSVSWGIVFLQSTMMKGMIESGARQGLKESFSQFSQKLAQNFKVQDKANFSDKEHFLATLQTEDQWHWWQEVSYFCNFTVVSTFFMCLYVMVHIFYCGPSLPQGLEFGGLELPDSFGELIIGGVLSIQLQRVYNMLSHFVQARFQMGTDHGLKAHGVGWVLTVALIEGVDLASLESERVSDPYVVFTCNAQTRSSSVKLQTSNPQWNEILEFEAMEEPPSVLDVEVFDFDGPFDRDVSLGHAEINFLKHTSTELADMWLLLEGKLAQSSQSKLHLRIFLDNNKGVETIKEYLGKMEKEVGKKLNLRSPQRSSTFQKLFSLPPEEFLIKDLTCYLKRKMPLQGRLFLSARILGFYANFFGHKTKFFFLWEDIEDIQVLPPSLATLGSPILVIILRSGRGIDARHGAKTQDEEGRLRFHFQSFSSFGAACRTIKALWRTRILNLYQKDQITEEHEDQEGFVIPEDSASILENKANMSRIFSAELPIRMISVMGIFAGGTLEHKIMQRKGCMNYETTAWELIKPEVFERCVSYQFNRQVSTFGGEVTSTQQKSPNADTGGLTVVEVMALHGVPFANHFHIHFRFEIEPSSLGERACKFDAYISVRWLKSSKFQKRINRNIISKFKVRLKEIFELVQEEILIMSQNSNE 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4227g00004 991 SMART C2_3c 1 79 IPR000008 -
Vium4227g00004 991 SMART C2_3c 506 605 IPR000008 -
Vium4227g00004 991 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 115 IPR035892 -
Vium4227g00004 991 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 505 629 IPR035892 -
Vium4227g00004 991 Gene3D C2 domain 3 132 IPR035892 -
Vium4227g00004 991 Pfam C2 domain 506 605 IPR000008 -
Vium4227g00004 991 Pfam C2 domain 6 83 IPR000008 -
Vium4227g00004 991 MobiDBLite consensus disorder prediction 165 186 - -
Vium4227g00004 991 ProSiteProfiles VASt domain profile. 219 392 IPR031968 -
Vium4227g00004 991 SMART gram2001c 658 724 IPR004182 -
Vium4227g00004 991 Gene3D C2 domain 491 625 IPR035892 -
Vium4227g00004 991 ProSiteProfiles C2 domain profile. 486 605 IPR000008 -
Vium4227g00004 991 CDD C2 507 607 - -
Vium4227g00004 991 CDD C2 8 83 - -
Vium4227g00004 991 ProSiteProfiles VASt domain profile. 819 982 IPR031968 -
Vium4227g00004 991 ProSiteProfiles C2 domain profile. 1 81 IPR000008 -
Vium4227g00004 991 Gene3D - 656 783 IPR011993 -
Vium4227g00004 991 Pfam GRAM domain 659 751 IPR004182 -
Vium4227g00004 991 Pfam VAD1 Analog of StAR-related lipid transfer domain 823 965 IPR031968 -
Vium4227g00004 991 Pfam VAD1 Analog of StAR-related lipid transfer domain 223 372 IPR031968 -
Vium4227g00004 991 PANTHER BNAA05G37250D PROTEIN 5 983 IPR044511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4227g00004 Vium-Chr4227 29449 33388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4227g00004 506 601 C2H2 Transcription Factor Family AT4G21160 34.375 7.91e-06 47.4