Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4227g00001 ATGGAATCCAAACCCGGTCAAAATATCAAGCTCCTCTGTAGTTACGGCGGCAAAATTCGCCCACGCACCACCGACGGCGAACTCCGTTACGTTGGAGGCCACACCAGAGTTCTCACCGTCCTCCGTTCGATCTCCATTTCAGAATTGATGGTCAAACTCACTGAGTTTTGCGGTTCGTCTGTGATCTTGAAGTGTCAATTACCCAAGGGAGACTTGGAGACCCTGATTTCCATCACCAACGACGAAGATCTCGCTAACATAATCGAAGAATACGATCGTGCCTCGTTGAAACTGGCGCATCCAATGAAGATCAGAGCCGTTCTCTTGCCGCCGAGGTCGATGAAGAAGGTTTTGTCTACTCCAACGTTGTCCTCGGCGTCGTCCAGCGCCAGTCACTCTCCGGCCAGATCGCCTCATACTTCCGCCGAATCCCTGCCGTACACGGCGTACCGTTACGGATGCAATTACCGGACTCCGCCGCTGCCGGCTGCGTACGCTATCGGCGTGCGTAACGGTTCGGCGAAGGCCTGCTGCTACACGCAGTTCGATGGAAACCATAGATTTTGGCGTCGTGGACCTCACTGTTACAATTACTGCCACTGA 603 0.5373 MESKPGQNIKLLCSYGGKIRPRTTDGELRYVGGHTRVLTVLRSISISELMVKLTEFCGSSVILKCQLPKGDLETLISITNDEDLANIIEEYDRASLKLAHPMKIRAVLLPPRSMKKVLSTPTLSSASSSASHSPARSPHTSAESLPYTAYRYGCNYRTPPLPAAYAIGVRNGSAKACCYTQFDGNHRFWRRGPHCYNYCH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4227g00001 200 PANTHER OS05G0427100 PROTEIN-RELATED 5 129 - -
Vium4227g00001 200 Gene3D - 29 108 - -
Vium4227g00001 200 Pfam PB1 domain 25 97 IPR000270 GO:0005515
Vium4227g00001 200 SUPERFAMILY CAD & PB1 domains 25 113 - -
Vium4227g00001 200 SMART PB1_new 23 111 IPR000270 GO:0005515
Vium4227g00001 200 MobiDBLite consensus disorder prediction 123 142 - -
Vium4227g00001 200 CDD PB1_UP2 12 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4227g00001 Vium-Chr4227 387 1534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4227g00001 9 110 MAP Kinase Kinase Kinase AT1G04700 46.078 6.07e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4227g00001 - - vra:106761207 379.793