Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4226g00003 ATGAATGTGCAGCTTGCCTATCGTAGGTTCTTCATGAATCTGCTATTCCTTGCATTCACATTGATCCTATTACATGGATCATCAACAGCAAGAGAAGAAGCTTCCCGACATGATGACGATGATGTCGTCAATATCGGTGCCATATTCACATTGCAAACTATAAACGGCAAAGTTTCCAAAATTGCCATCGAAGCAGCTGAGCAAGACGTAAACTCCGACCCCCGCATCCTGGGGGGACGTAGATTGTCCATAAACGTCCATGATTCCAACTTCAGTGGTTTTCTTGGCTTCATTGGGGCCCTCAAGTTCTTGATGACCGACACAGTGGCTATAATCGGTCCACAAACCTCAGGAATGGCCCATGTGCTTTCGCATCTCGCAAATGAGCTCCATGTTCCCCTACTCTCCTTCACCGCTCTGGATTCCACCCTAACACCTCTCCAGTATCCTTATTTTGTCCAAACAGCGCCCAGCGATCAGTTCCAGATGACTGCAATTGCGGACATGATTAGTAATTATGGTTGGAGAGAAGTCATAGCAATATTCAGTGATGATGATCCGAGTCGAAATGGGGTAACTGTTCTGGGGGATAAACTTGCAGAAAGGGGTTGTAAGGTATCTTACAAAGCAGCACTGCCTCCTGATCCAACCGCCACTCCAAGCTTTATTATCAGCCAGTTAGTGAAGATTAAGAGCATGGAGTCTCGAATAATCGTTTTACACACCTTCGCCAAAACTGGTCTCCTGGTTTTTGACCTGGCTCAAAAACAAGGAATGATGTCCAAAGGGTATGTTTGGATAGCTACTGCATGGTTATCGACTGTTTTAGATTCATCTGCTTCAAACACTTCTAACTCAATTCTAGGAGTTCTTACCCTTCGCCCTCACACCCCTCAATCCTTAAAAAAACAGGCATTTATCTCAAGGTGGAAACACTTAAGTAATGGCTCAATTGGGTTAAATCCATACGGACTCTATGCCTATGATTCTGTGTGGATGATTGCTCGGGCACTGAACTTATTCTTTGATCAGAAAGGAAGGGTTTCTTTTTCTAACAAAAATTTAAGTAGTACGGGGGAAGAGACTCTGGATCTGGGTGCTTTGAGCATTTTTGATGGAGGGAAGCAACTACTTGATAACATATTGCGCATTAATATGACTGGATTGACTGGACCTATTCACTTTGGTTCAGATAGATCTCCTCCACATCCATCATTTGATATCATTAATGTAATTGCCACAGGTTTTCGGAGCATCGGTTACTGGTCTAATTACTCTGGGCTCTCCGTAATCACCCCAGAGAAACTTCAGTTGAAGCCTGCCAATCGTTCAATTTCAAACCAGCATCTAAAGCCTGTCATATGGCCTGGAAATACCATAGAAAGGCCTCGTGGATGGGTTTTCCCAAATAATGGGAGGCAACTGAGAATTGGAGTTCCCAACAGAGTTAGTTATAGAGACATAGTCTCACAAATAAATGCCTCCAATGCAGTTCAAGGATATTGCATAGAGATATTCCGAGCTGCCATAAAACTTCTTCCATATGCAGTTCAGTATAAGTTCGTTCTGTTTGGAGATGGAAAAAATAACCCAAGCTACTATGATCTTGTCAACATGATTACTCTTGATGTTTTCGATGTTGCTGTAGGTGACATTGCTATTGTCACTGACCGAACAAAGATTGTGGATTTTACTCAGCCATATATAGAGTCGGGGCTAGTTGTGGTTGCTCCGGTAAACAAATTGAAGTCGCATGCTTGGGCTTTCTTGCGACCATTTACTCCAATGATGTGGGGTGTCACTGCATTTTTTTTCCTTTTTGTTGGAACAGTGGTGTGGATTCTTGAACATAGAACGAACGATGACTTTCGGGGGCCGCCAAAGGAACAGATAGTTACAGTTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTGAGTCCACTTGGTCGAATTGTGTTGATTATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTGACAGTGCAGCAGCTGTCTTCACCCATAACAGGAATCGATAGCTTGATATCCAGCAGTGAACGTATAGGATTCCAAGTAGGCTCGTTTGCTGCAAACTATCTAACCGAGCAACTCAACATCCCCAAACATAGACTTGTTCCTCTTGGCTCGCCAGAAGAATATGCCATTGCCCTTGAAAGAGGAACAGTTGCAGCAGTGGTGGATGAAAGGCCATATGTAGAACTATTCCTTTCAGACCACTGCGAATTCTCAATCAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGTGAGTATCTTTATAATTGGCATTTCCTAG 2364 0.4327 MNVQLAYRRFFMNLLFLAFTLILLHGSSTAREEASRHDDDDVVNIGAIFTLQTINGKVSKIAIEAAEQDVNSDPRILGGRRLSINVHDSNFSGFLGFIGALKFLMTDTVAIIGPQTSGMAHVLSHLANELHVPLLSFTALDSTLTPLQYPYFVQTAPSDQFQMTAIADMISNYGWREVIAIFSDDDPSRNGVTVLGDKLAERGCKVSYKAALPPDPTATPSFIISQLVKIKSMESRIIVLHTFAKTGLLVFDLAQKQGMMSKGYVWIATAWLSTVLDSSASNTSNSILGVLTLRPHTPQSLKKQAFISRWKHLSNGSIGLNPYGLYAYDSVWMIARALNLFFDQKGRVSFSNKNLSSTGEETLDLGALSIFDGGKQLLDNILRINMTGLTGPIHFGSDRSPPHPSFDIINVIATGFRSIGYWSNYSGLSVITPEKLQLKPANRSISNQHLKPVIWPGNTIERPRGWVFPNNGRQLRIGVPNRVSYRDIVSQINASNAVQGYCIEIFRAAIKLLPYAVQYKFVLFGDGKNNPSYYDLVNMITLDVFDVAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPVNKLKSHAWAFLRPFTPMMWGVTAFFFLFVGTVVWILEHRTNDDFRGPPKEQIVTVLWFSFSTMFFAHRENTVSPLGRIVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSSERIGFQVGSFAANYLTEQLNIPKHRLVPLGSPEEYAIALERGTVAAVVDERPYVELFLSDHCEFSIRGQEFTKSGWGFVSIFIIGIS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4226g00003 787 Gene3D - 586 720 - -
Vium4226g00003 787 FunFam Glutamate receptor 158 314 - -
Vium4226g00003 787 Pfam Receptor family ligand binding region 61 411 IPR001828 -
Vium4226g00003 787 Pfam Bacterial extracellular solute-binding proteins, family 3 492 761 IPR001638 -
Vium4226g00003 787 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 779 IPR015683 -
Vium4226g00003 787 Gene3D - 477 585 - -
Vium4226g00003 787 SMART GluR_14 476 787 IPR001320 GO:0015276|GO:0016020
Vium4226g00003 787 Pfam Ligand-gated ion channel 597 700 IPR001320 GO:0015276|GO:0016020
Vium4226g00003 787 FunFam Glutamate receptor 586 716 - -
Vium4226g00003 787 CDD PBP1_GABAb_receptor_plant 44 430 IPR044440 -
Vium4226g00003 787 SUPERFAMILY Periplasmic binding protein-like II 453 779 - -
Vium4226g00003 787 Gene3D - 158 428 - -
Vium4226g00003 787 FunFam Glutamate receptor 741 776 - -
Vium4226g00003 787 PIRSF IGluLR_plant 8 782 IPR017103 -
Vium4226g00003 787 FunFam Glutamate receptor 470 586 - -
Vium4226g00003 787 SUPERFAMILY Periplasmic binding protein-like I 40 467 IPR028082 -
Vium4226g00003 787 Gene3D - 61 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4226g00003 Vium-Chr4226 4491 7805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4226g00003 11 783 Ion Channels AT4G35290 64.698 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4226g00003 K05387 - gmx:100793969 1309.66