Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4226g00002 ATGAATGTGCAGCTTGCCTATCGTAGGTTCTTCATGAATCTGCTATTCCTTGCATTCACATTGATCCTATTACATGGATCATCAACAGCAAGAGAAGAAGCTTCCCGACATGATGACGATGATGTCGTCAATATCGGTGCCATATTCACATTGCAAACTATAAACGGCAAAGTTTCCAAAATTGCCATCGAAGCAGCTGAGCAAGACGTAAACTCCGACCCCCGCATCCTGGGGGGACGTAGATTGTCCATAAACGTCCATGATTCCAACTTCAGTGGTTTTCTTGGCTTCATTGGGGCCCTCAAGTTCTTGATGACCGACACAGTGGCTATAATCGGTCCACAAACCTCAGGAATGGCCCATGTGCTTTCGCATCTCGCAAATGAGCTCCATGTTCCCCTACTCTCCTTCACCGCTCTGGATTCCACCCTAACACCTCTCCAGTATCCTTATTTTGTCCAAACAGCGCCCAGCGATCAGTTCCAGATGACTGCAATTGCGGACATGATTAGTAATTATGGTTGGAGAGAAGTCATAGCAATATTCAGTGATGATGATCCGAGTCGAAATGGGGTAACTGTTCTGGGGGATAAACTTGCAGAAAGGGGTTGTAAGGTATCTTACAAAGCAGCACTGCCTCCTGATCCAACCGCCACTCCAAGCTTTATTATCAGCCAGTTAGTGAAGATTAAGAGCATGGAGTCTCGAATAATCGTTTTACACACCTTCGCCAAAACTGGTCTCCTGGTTTTTGACCTGGCTCAAAAACAAGGAATGATGTCCAAAGGGTATGTTTGGATAGCTACTGCATGGTTATCGACTGTTTTAGATTCATCTGCTTCAAACACTTCTAACTCAATTCTAGGAGTTCTTACCCTTCGCCCTCACACCCCTCAATCCTTAAAAAAACAGGCATTTATCTCAAGGTGGAAACACTTAAGTAATGGCTCAATTGGGTTAAATCCATACGGACTCTATGCCTATGATTCTGTGTGGATGATTGCTCGGGCACTGAACTTATTCTTTGATCAGAAAGGAAGGGTTTCTTTTTCTAACAAAAATTTAAGTAGTACGGGGGAAGAGACTCTGGATCTGGGTGCTTTGAGCATTTTTGATGGAGGGAAGCAACTACTTGATAACATATTGCGCATTAATATGACTGGATTGACTGGACCTATTCACTTTGGTTCAGATAGATCTCCTCCACATCCATCATTTGATATCATTAATGTAATTGCCACAGGTTTTCGGAGCATCGGTTACTGGTCTAATTACTCTGGGCTCTCCGTAATCACCCCAGAGAAACTTCAGTTGAAGCCTGCCAATCGTTCAATTTCAAACCAGCATCTAAAGCCTGTCATATGGCCTGGAAATACCATAGAAAGGCCTCGTGGATGGGTTTTCCCAAATAATGGGAGGCAACTGAGAATTGGAGTTCCCAACAGAGTTAGTTATAGAGACATAGTCTCACAAATAAATGCCTCCAATGCAGTTCAAGGATATTGCATAGAGATATTCCGAGCTGCCATAAAACTTCTTCCATATGCAGTTCAGTATAAGTTCGTTCTGTTTGGAGATGGAAAAAATAACCCAAGCTACTATGATCTTGTCAACATGATTACTCTTGATGTTTTCGATGTTGCTGTAGGTGACATTGCTATTGTCACTGACCGAACAAAGATTGTGGATTTTACTCAGCCATATATAGAGTCGGGGCTAGTTGTGGTTGCTCCGGTAAACAAATTGAAGTCGCATGCTTGGGCTTTCTTGCGACCATTTACTCCAATGATGTGGGGTGTCACTGCATTTTTTTTCCTTTTTGTTGGAACAGTGGTGTGGATTCTTGAACATAGAACGAACGATGACTTTCGGGGGCCGCCAAAGGAACAGATAGTTACAGTTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTGAGTCCACTTGGTCGAATTGTGTTGATTATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTGACAGTGCAGCAGCTGTCTTCACCCATAACAGGAATCGATAGCTTGATATCCAGCAGTGAACGTATAGGATTCCAAGTAGGCTCGTTTGCTGCAAACTATCTAACCGAGCAACTCAACATCCCCAAACATAGACTTGTTCCTCTTGGCTCGCCAGAAGAATATGCCATTGCCCTTGAAAGAGGAACAGTTGCAGCAGTGGTGGATGAAAGGCCATATGTAGAACTATTCCTTTCAGACCACTGCGAATTCTCAATCAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCTAGGGACTCTCCTTTTGCAGTTGATATGTCAACAGCCATTTTAACTTTATCTGAGAATGGTGAACTTCAGAGGATCCATGAAAAGTGGCTTTCAGAAAAGGCTTGTGCTCATCGCAGTAGTGAGAATGAACAACTTCAATTGAATAGCTTCAAGGGCCTGTTTCTAATATGTGGGATAACATGTTTTGTGGCGCTTTTGATATACTTCTTATCAATGCTACACCAGTTCAGTAAAAAATCCCCTATAAAAGCTGGTCCTTCAAATCGTGACAGCTCGCGTTCTGCACGCATCCAAACATTTCTAGATTTTGTGGACGAGAAAGAAGTCGTATCTCCCAGGAAATTAAAAAGAAAACTGGAACATATTTCATCAAATCGTTTGAGGAGCATATCAAAGAGCAGGAGTGAGAGAGTACAGTAA 2763 0.4282 MNVQLAYRRFFMNLLFLAFTLILLHGSSTAREEASRHDDDDVVNIGAIFTLQTINGKVSKIAIEAAEQDVNSDPRILGGRRLSINVHDSNFSGFLGFIGALKFLMTDTVAIIGPQTSGMAHVLSHLANELHVPLLSFTALDSTLTPLQYPYFVQTAPSDQFQMTAIADMISNYGWREVIAIFSDDDPSRNGVTVLGDKLAERGCKVSYKAALPPDPTATPSFIISQLVKIKSMESRIIVLHTFAKTGLLVFDLAQKQGMMSKGYVWIATAWLSTVLDSSASNTSNSILGVLTLRPHTPQSLKKQAFISRWKHLSNGSIGLNPYGLYAYDSVWMIARALNLFFDQKGRVSFSNKNLSSTGEETLDLGALSIFDGGKQLLDNILRINMTGLTGPIHFGSDRSPPHPSFDIINVIATGFRSIGYWSNYSGLSVITPEKLQLKPANRSISNQHLKPVIWPGNTIERPRGWVFPNNGRQLRIGVPNRVSYRDIVSQINASNAVQGYCIEIFRAAIKLLPYAVQYKFVLFGDGKNNPSYYDLVNMITLDVFDVAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPVNKLKSHAWAFLRPFTPMMWGVTAFFFLFVGTVVWILEHRTNDDFRGPPKEQIVTVLWFSFSTMFFAHRENTVSPLGRIVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSSERIGFQVGSFAANYLTEQLNIPKHRLVPLGSPEEYAIALERGTVAAVVDERPYVELFLSDHCEFSIRGQEFTKSGWGFAFPRDSPFAVDMSTAILTLSENGELQRIHEKWLSEKACAHRSSENEQLQLNSFKGLFLICGITCFVALLIYFLSMLHQFSKKSPIKAGPSNRDSSRSARIQTFLDFVDEKEVVSPRKLKRKLEHISSNRLRSISKSRSERVQ 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4226g00002 920 FunFam Glutamate receptor 158 314 - -
Vium4226g00002 920 Pfam Bacterial extracellular solute-binding proteins, family 3 492 812 IPR001638 -
Vium4226g00002 920 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 872 IPR015683 -
Vium4226g00002 920 Gene3D - 61 403 - -
Vium4226g00002 920 CDD GluR_Plant 473 811 - -
Vium4226g00002 920 Gene3D - 158 428 - -
Vium4226g00002 920 SUPERFAMILY Periplasmic binding protein-like I 40 467 IPR028082 -
Vium4226g00002 920 FunFam Glutamate receptor 712 815 - -
Vium4226g00002 920 Gene3D - 775 810 - -
Vium4226g00002 920 Gene3D - 477 585 - -
Vium4226g00002 920 Pfam Receptor family ligand binding region 61 411 IPR001828 -
Vium4226g00002 920 CDD PBP1_GABAb_receptor_plant 44 430 IPR044440 -
Vium4226g00002 920 FunFam Glutamate receptor 586 716 - -
Vium4226g00002 920 FunFam Glutamate receptor 470 586 - -
Vium4226g00002 920 SMART GluR_14 476 813 IPR001320 GO:0015276|GO:0016020
Vium4226g00002 920 PIRSF IGluLR_plant 8 919 IPR017103 -
Vium4226g00002 920 Gene3D - 745 774 - -
Vium4226g00002 920 SUPERFAMILY Periplasmic binding protein-like II 453 813 - -
Vium4226g00002 920 Gene3D - 586 720 - -
Vium4226g00002 920 Pfam Ligand-gated ion channel 813 841 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4226g00002 Vium-Chr4226 4046 7804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4226g00002 12 918 Ion Channels AT2G17260 60.846 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4226g00002 K05387 - gmx:100793969 1303.12