Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4221g00014 ATGATCCCTCGGAAAACCGAAACCTTGAAACTGGCATTGAGGGAAGATGAAGAGATAGAGGTTATAAAATCAAGGTCAAAGCCGCTGAAAGAAAAAACTACCAAAGCGGAGAGGCGAGCCTTGCAAGAAGCACAGAGAGCTGCTAAAGCTGCTTCTTCTAACGTCGAGGGAAGTAAGGCTGTTGCTGGAACTGGTAGAGCTGCCTTGGGTAAAAGTACAAAGCAGTCTTCACAAAAGAAAGCTGGTCCTTCTTCTCCAGTGGCTGCTGATAAAAAAGCAGGAGATCGACCTTTGGATAAAGACAGGAAAAAGGATGCTCCTCATCCACGATTGCAATTTGATGATGAAAGCCGAATGGAAAAGGCTAGAAGGCGTGCAGTAGTCAATCCAACTGAATCTAGAACCAGAGTTGAATTATTTCAGCATTTGCCTCAATATGAACACGGGACTAAGCTTTCTAGTCTTGAATCAAAGTTTTTCCACCTTGATTTAGTTCACCCTTCTGTATTTGAGGTAGGTCTTCGTTATTCGGCAGGAGAAATATCAGGGGGTAATGCTCGTTGTATAGCAATGCTAAGAGCACTTCAAGATGCCATTAGAGATTACTGCACAGATCATGAAAAGGCCCTTGTTAGGTATTTAACTGCAAAAATCAACAGTTATGTTTCATTCTTTGCTGAATGCAGACCACTTTCAATGAGCATGGGAAATGCAATTAGGTTTGTAAAGAGTCGTATTGTCAACCTGTCTTTAAATTATTCTGAGTTTGAGGCAAAAACAACCCTATGTTCAGATATTGACCGGTTTATAAATGAAAAAATAATTCTTGCTGATAAGGTGATTGTCCGACATGCTTTTACAAAGATTAAGGATGGGGATGTGCTTCTCACATATGGATTGTCATGTGTTGTTGAGATGATTCTTTTATATGCCCATGAACTGGGTAAAAAGTTTCGTGTTGTCGTGGTCGATTCCCAGCCAAGGCTAGAAGGTCAGGCCTTGCTTCGTAGGCTAGTTGCTAAGGGTCTAAGTTGCACATATACTCATATAAATGCTGTTTCTTATATCATGCATGAGGTCACACGAGTTCTTCTGGGAGCTTCTGCAGTTTTGTCTAATGGAACTGTATATTCAAGGGTTGGGACTTCTTGTGTTGCAATGGTGGCTCATGCATTTCGTGTTCCTGTATTGATCTGTTGTGAAGCATATAAATTTCATGAAAGGGTGCTACTGGATTCAATATGTTCTAACGAACTAGGTGACCCAGATGCTATTGCCAGGGTTCCTGGACGAATAGATGTCAATTATCTGGATAATTGGGCCAGTGAAGACAATTTGAGGCTTTTGAATTTGATGTATGATGCTACTCCTTCAGATTATGTGTCGGTTATCGTGACGGATTATGGCATGCTTCCTCCTACAAGCGTGCCTGTAATAGTACGTGAATATCGAGAGCATTTGTTGATGTAG 1470 0.4129 MIPRKTETLKLALREDEEIEVIKSRSKPLKEKTTKAERRALQEAQRAAKAASSNVEGSKAVAGTGRAALGKSTKQSSQKKAGPSSPVAADKKAGDRPLDKDRKKDAPHPRLQFDDESRMEKARRRAVVNPTESRTRVELFQHLPQYEHGTKLSSLESKFFHLDLVHPSVFEVGLRYSAGEISGGNARCIAMLRALQDAIRDYCTDHEKALVRYLTAKINSYVSFFAECRPLSMSMGNAIRFVKSRIVNLSLNYSEFEAKTTLCSDIDRFINEKIILADKVIVRHAFTKIKDGDVLLTYGLSCVVEMILLYAHELGKKFRVVVVDSQPRLEGQALLRRLVAKGLSCTYTHINAVSYIMHEVTRVLLGASAVLSNGTVYSRVGTSCVAMVAHAFRVPVLICCEAYKFHERVLLDSICSNELGDPDAIARVPGRIDVNYLDNWASEDNLRLLNLMYDATPSDYVSVIVTDYGMLPPTSVPVIVREYREHLLM 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4221g00014 489 MobiDBLite consensus disorder prediction 16 44 - -
Vium4221g00014 489 Pfam Initiation factor 2 subunit family 181 473 IPR000649 GO:0044237
Vium4221g00014 489 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 17 486 - -
Vium4221g00014 489 MobiDBLite consensus disorder prediction 16 130 - -
Vium4221g00014 489 MobiDBLite consensus disorder prediction 92 130 - -
Vium4221g00014 489 MobiDBLite consensus disorder prediction 69 83 - -
Vium4221g00014 489 Gene3D - 277 483 IPR042529 -
Vium4221g00014 489 SUPERFAMILY NagB/RpiA/CoA transferase-like 164 483 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4221g00014 Vium-Chr4221 83165 87475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4221g00014 19 489 Eukaryotic Initiation Factors Gene Family AT5G38640 68.344 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4221g00014 K03680 - gmx:100795256 796.578