Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4221g00013 ATGGATTCAACTCGTGTCTCTCATAACCTTGGGGATCCCAAAATTCGTCAAGTTGGTTTCTTTGTTCCCGAATCCTCCACCACCGATTCCCACAAGATACTGTCGCCAAGTCATCTTCCCGTTCCGGAGATGCAGAATTCCGTCCATGGCCAAGTGACATCTCGGAGCTATGATCCCTCGGAAAACCGAAACCTTGAAACTGGCATTGAAAAGAGGGAAGATGAAGAGATAGAGGTTATAAAATCAAGGTCAAAGCCGCTGAAAGAAAAAACTACCAAAGCGGAGAGGCGAGCCTTGCAAGAAGCACAGAGAGCTGCTAAAGCTGCTTCTTCTAACGTCGAGGGAAGTAAGGCTGTTGCTGGAACTGGTAGAGCTGCCTTGGGTAAAAGTACAAAGCAGTCTTCACAAAAGAAAGCTGGTCCTTCTTCTCCAGTGGCTGCTGATAAAAAAGCAGGAGATCGACCTTTGGATAAAGACAGGAAAAAGGATGCTCCTCATCCACGATTGCAATTTGATGATGAAAGCCGAATGGAAAAGGCTAGAAGGCGTGCAGTAGTCAATCCAACTGAATCTAGAACCAGAGTTGAATTATTTCAGCATTTGCCTCAATATGAACACGGGACTAAGCTTTCTAGTCTTGAATCAAAGTTTTTCCACCTTGATTTAGTTCACCCTTCTGTATTTGAGGTAGGTCTTCGTTATTCGGCAGGAGAAATATCAGGGGGTAATGCTCGTTGTATAGCAATGCTAAGAGCACTTCAAGATGCCATTAGAGATTACTGCACAGATCATGAAAAGGCCCTTGTTAGGTATTTAACTGCAAAAATCAACAGTTATGTTTCATTCTTTGCTGAATGCAGACCACTTTCAATGAGCATGGGAAATGCAATTAGGTTTGTAAAGAGTCGTATTGTCAACCTGTCTTTAAATTATTCTGAGTTTGAGGCAAAAACAACCCTATGTTCAGATATTGACCGGTTTATAAATGAAAAAATAATTCTTGCTGATAAGGTGATTGTCCGACATGCTTTTACAAAGATTAAGGATGGGGATGTGCTTCTCACATATGGATTGTCATGTGTTGTTGAGATGATTCTTTTATATGCCCATGAACTGGGTAAAAAGTTTCGTGTTGTCGTGGTCGATTCCCAGCCAAGGCTAGAAGGTCAGGCCTTGCTTCGTAGGCTAGTTGCTAAGGGTCTAAGTTGCACATATACTCATATAAATGCTGTTTCTTATATCATGCATGAGGTCACACGAGTTCTTCTGGGAGCTTCTGCAGTTTTGTCTAATGGAACTGTATATTCAAGGGTTGGGACTTCTTGTGTTGCAATGGTGGCTCATGCATTTCGTGTTCCTGTATTGATCTGTTGTGAAGCATATAAATTTCATGAAAGGGTGCTACTGGATTCAATATGTTCTAACGAACTAGGTGACCCAGATGCTATTGCCAGGGTTCCTGGACGAATAGATGTCAATTATCTGGATAATTGGGCCAGTGAAGACAATTTGAGGCTTTTGAATTTGATGTATGATGCTACTCCTTCAGATTATGTGTCGGTTATCGTGACGGATTATGGCATGCTTCCTCCTACAAGCGTGCCTGTAATAGTACGTGAATATCGAGAGCATTTGTTGATGTAG 1644 0.4209 MDSTRVSHNLGDPKIRQVGFFVPESSTTDSHKILSPSHLPVPEMQNSVHGQVTSRSYDPSENRNLETGIEKREDEEIEVIKSRSKPLKEKTTKAERRALQEAQRAAKAASSNVEGSKAVAGTGRAALGKSTKQSSQKKAGPSSPVAADKKAGDRPLDKDRKKDAPHPRLQFDDESRMEKARRRAVVNPTESRTRVELFQHLPQYEHGTKLSSLESKFFHLDLVHPSVFEVGLRYSAGEISGGNARCIAMLRALQDAIRDYCTDHEKALVRYLTAKINSYVSFFAECRPLSMSMGNAIRFVKSRIVNLSLNYSEFEAKTTLCSDIDRFINEKIILADKVIVRHAFTKIKDGDVLLTYGLSCVVEMILLYAHELGKKFRVVVVDSQPRLEGQALLRRLVAKGLSCTYTHINAVSYIMHEVTRVLLGASAVLSNGTVYSRVGTSCVAMVAHAFRVPVLICCEAYKFHERVLLDSICSNELGDPDAIARVPGRIDVNYLDNWASEDNLRLLNLMYDATPSDYVSVIVTDYGMLPPTSVPVIVREYREHLLM 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4221g00013 547 MobiDBLite consensus disorder prediction 64 102 - -
Vium4221g00013 547 MobiDBLite consensus disorder prediction 38 188 - -
Vium4221g00013 547 Pfam Initiation factor 2 subunit family 239 531 IPR000649 GO:0044237
Vium4221g00013 547 MobiDBLite consensus disorder prediction 150 188 - -
Vium4221g00013 547 MobiDBLite consensus disorder prediction 127 141 - -
Vium4221g00013 547 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 49 544 - -
Vium4221g00013 547 Gene3D - 335 541 IPR042529 -
Vium4221g00013 547 MobiDBLite consensus disorder prediction 38 63 - -
Vium4221g00013 547 SUPERFAMILY NagB/RpiA/CoA transferase-like 222 541 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4221g00013 Vium-Chr4221 83165 87637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4221g00013 77 547 Eukaryotic Initiation Factors Gene Family AT5G38640 68.344 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4221g00013 K03680 - gmx:100795256 862.833