Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4221g00010 ATGGGTGTGGACTACTATAAGATTTTGCAGGTCGACAAGAATGCCACGGATGAAGATTTGAAGAAAGCTTACAGAAAGCTTGCAATGAAATGGCACCCTGACAAGAATGCAACCAATAAGAAAGAGGCTGAGACTAAGTTCAAGCAGATATCTGAAGCCTACGAGGTTTTGAGTGATCCCCAGAAGAGAGCCATTTATGATCAGTACGGAGAAGAAGGGCTTAAAGGGCAAGTACCACCTTCAGATGCTGGTGGAGCAACGTTCTTCCAGACTGGGGATGGTCCAACAGCATTCAGGTTCAATCCAAGAAACGCAAATGACATCTTTTCTGAGTTTTTCGGGTTTTCAAGCCCAAGCCCATTTGGTGGTGGTGGTGATGGCATGAGGGGTGGTTCCTTCGGTGGAGTTTTTGGCAATGGTATGTTTGGTCCATTTGCAGAAGGAAGGCCAATGAATCAGGGTCCACGCAAGGCACCTCCTATAGAGAAGAGGTTGCCTTGCACCCTTGAAGAGCTCTATAAGGGCACTACCAAAAAAATGAAGATCTCAAGGGAGATTGCTGATGCAAGTGGGAAAACTTTACCTGTGGAGGAAATATTGACCTTGGAAATTAAAGCAGGGTGGAAGAAGGGGACAAAGATCACATTCACAGAAAAAGGGAATGAGCTTCCAAATATGATTGCTTCTGATCTTGTGTTTGTTATTGATGAGAAACCTCACCCAGTGTTTACTAGAGATGGTAACGATTTGGTTATGACACAAAAAGTGTCACTTGCAGAAGCTCTTACGGGTTACACTGTTCATCTTACAACACTGGATGGAAGGGCTCTAAACATTACCATTAACAATGTTATTCATCCAAACTATGAAGAGGTTGTCCCAAGGGAAGGGATGCCAATTTCAAAAGATCCTTCAAAGAAGGGTAATCTTAGAATCAAATTCAACATCAAATTCCCAGCAAAGTTGACATCAGAGCAAAAGGCAGGAATGAAGAAGATGCTATCATATTGA 1011 0.4303 MGVDYYKILQVDKNATDEDLKKAYRKLAMKWHPDKNATNKKEAETKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPSDAGGATFFQTGDGPTAFRFNPRNANDIFSEFFGFSSPSPFGGGGDGMRGGSFGGVFGNGMFGPFAEGRPMNQGPRKAPPIEKRLPCTLEELYKGTTKKMKISREIADASGKTLPVEEILTLEIKAGWKKGTKITFTEKGNELPNMIASDLVFVIDEKPHPVFTRDGNDLVMTQKVSLAEALTGYTVHLTTLDGRALNITINNVIHPNYEEVVPREGMPISKDPSKKGNLRIKFNIKFPAKLTSEQKAGMKKMLSY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4221g00010 336 Pfam DnaJ C terminal domain 161 319 IPR002939 -
Vium4221g00010 336 CDD DnaJ_C 159 322 - -
Vium4221g00010 336 CDD DnaJ 4 59 IPR001623 -
Vium4221g00010 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 155 249 IPR008971 GO:0006457|GO:0051082
Vium4221g00010 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 334 - -
Vium4221g00010 336 FunFam Dnaj homolog subfamily b member 157 238 - -
Vium4221g00010 336 Gene3D - 160 238 - -
Vium4221g00010 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 328 IPR008971 GO:0006457|GO:0051082
Vium4221g00010 336 FunFam DnaJ subfamily B member 13 3 124 - -
Vium4221g00010 336 Pfam DnaJ domain 4 67 IPR001623 -
Vium4221g00010 336 Gene3D DnaJ domain 3 122 IPR036869 -
Vium4221g00010 336 SUPERFAMILY Chaperone J-domain 3 121 IPR036869 -
Vium4221g00010 336 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vium4221g00010 336 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vium4221g00010 336 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vium4221g00010 336 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vium4221g00010 336 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vium4221g00010 336 Gene3D - 240 320 - -
Vium4221g00010 336 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vium4221g00010 336 FunFam DnaJ subfamily B member 13 240 320 - -
Vium4221g00010 336 SMART dnaj_3 3 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4221g00010 Vium-Chr4221 70396 72349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4221g00010 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 4.59e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4221g00010 K09510 - gmx:100775897 536.184