Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4221g00009 ATGGGTGTGGACTACTATAAGATTTTGCAGGTCGACAAGAATGCCACGGATGAAGATTTGAAGAAAGCTTACAGAAAGCTTGCAATGAAATGGCACCCTGACAAGAATGCAACCAATAAGAAAGAGGCTGAGACTAAGTTCAAGCAGATATCTGAAGCCTACGAGAATCTAAGCTGGTGTATTGGTTTGGTGAAGGTTTTGAGTGATCCCCAGAAGAGAGCCATTTATGATCAGTACGGAGAAGAAGGGCTTAAAGGGCAAGTACCACCTTCAGATGCTGGTGGAGCAACGTTCTTCCAGACTGGGGATGGTCCAACAGCATTCAGGTTCAATCCAAGAAACGCAAATGACATCTTTTCTGAGTTTTTCGGGTTTTCAAGCCCAAGCCCATTTGGTGGTGGTGGTGATGGCATGAGGGGTGGTTCCTTCGGTGGAGTTTTTGGCAATGGTATGTTTGGTCCATTTGCAGAAGGAAGGCCAATGAATCAGGGTCCACGCAAGGCACCTCCTATAGAGAAGAGGTTGCCTTGCACCCTTGAAGAGCTCTATAAGGGCACTACCAAAAAAATGAAGATCTCAAGGGAGATTGCTGATGCAAGTGGGAAAACTTTACCTGTGGAGGAAATATTGACCTTGGAAATTAAAGCAGGGTGGAAGAAGGGGACAAAGATCACATTCACAGAAAAAGGGAATGAGCTTCCAAATATGATTGCTTCTGATCTTGTGTTTGTTATTGATGAGAAACCTCACCCAGTGTTTACTAGAGATGGTAACGATTTGGTTATGACACAAAAAGTGTCACTTGCAGAAGCTCTTACGGGTTACACTGTTCATCTTACAACACTGGATGGAAGGGCTCTAAACATTACCATTAACAATGTTATTCATCCAAACTATGAAGAGGTTGTCCCAAGGGAAGGGATGCCAATTTCAAAAGATCCTTCAAAGAAGGGTAATCTTAGAATCAAATTCAACATCAAATTCCCAGCAAAGTTGACATCAGAGCAAAAGGCAGGAATGAAGAAGATGCTATCATATTGA 1041 0.4294 MGVDYYKILQVDKNATDEDLKKAYRKLAMKWHPDKNATNKKEAETKFKQISEAYENLSWCIGLVKVLSDPQKRAIYDQYGEEGLKGQVPPSDAGGATFFQTGDGPTAFRFNPRNANDIFSEFFGFSSPSPFGGGGDGMRGGSFGGVFGNGMFGPFAEGRPMNQGPRKAPPIEKRLPCTLEELYKGTTKKMKISREIADASGKTLPVEEILTLEIKAGWKKGTKITFTEKGNELPNMIASDLVFVIDEKPHPVFTRDGNDLVMTQKVSLAEALTGYTVHLTTLDGRALNITINNVIHPNYEEVVPREGMPISKDPSKKGNLRIKFNIKFPAKLTSEQKAGMKKMLSY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4221g00009 346 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 344 - -
Vium4221g00009 346 SUPERFAMILY Chaperone J-domain 3 131 IPR036869 -
Vium4221g00009 346 ProSiteProfiles dnaJ domain profile. 4 80 IPR001623 -
Vium4221g00009 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 165 259 IPR008971 GO:0006457|GO:0051082
Vium4221g00009 346 Pfam DnaJ domain 4 58 IPR001623 -
Vium4221g00009 346 FunFam Dnaj homolog subfamily b member 167 248 - -
Vium4221g00009 346 Gene3D - 250 330 - -
Vium4221g00009 346 CDD DnaJ 4 58 IPR001623 -
Vium4221g00009 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 338 IPR008971 GO:0006457|GO:0051082
Vium4221g00009 346 CDD DnaJ_C 169 332 - -
Vium4221g00009 346 Pfam DnaJ C terminal domain 171 329 IPR002939 -
Vium4221g00009 346 Gene3D - 170 248 - -
Vium4221g00009 346 FunFam DnaJ subfamily B member 13 3 134 - -
Vium4221g00009 346 PRINTS DnaJ domain signature 72 91 IPR001623 -
Vium4221g00009 346 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vium4221g00009 346 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vium4221g00009 346 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vium4221g00009 346 SMART dnaj_3 3 72 IPR001623 -
Vium4221g00009 346 Gene3D DnaJ domain 3 132 IPR036869 -
Vium4221g00009 346 FunFam DnaJ subfamily B member 13 250 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4221g00009 Vium-Chr4221 70390 72349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4221g00009 5 79 C2H2 Transcription Factor Family AT1G74250 32.911 2.01e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4221g00009 K09510 - gmx:100775897 528.094