Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4219g00008 ATGGATCAACCAAATCCACCACTCTCCTCCAAACCCAAACTCGCTTCAGAGTCGCCGCTCCACCGCTTCACTCCCACCTCTAACCGTTTCCGCAGCTCCCAGCTTCTCAGGGAGAGAGAAAGCAAGGGTGAAGGGGAAAAGGAGGATCCGAGTGCCTCACGGAAGGTTCTGAAAGCTGACCGCGAGAAACTCCGTAGGGATCGACTCAACGAACACTTCCAAGAGTTGGGAAACACGTTAGATCCGGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAAACCGTCCAAATGCTAAAGGACTTAACTGCTGAAGTTAATAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCACACGAACTAATGCAGGAAAAAAATGAACTCAGAGAAGAGAAGACCTCTCTTAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATGGACTGCAATTGACCATTCGGTTGTCATTAGTCCACCTTACTCTTATCCACTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTGGTCCCATTCCTAGTCCTTGTTCAATGTATGTCCCATATTCTACTCCAACTAACAACCCAGTTGATCCACCACCTGTGCTTTATGCTTCCACATCCCATGTGTCGAACCAAAGAGAATCTTTTAGCAAGTCATCGGGTGATAGAAGGCCTAGTAGTGATGCTGAACGATGTAGCGAGTCTCACGATGTGGCCACAGAACTTGAACTTAAGATGCCTGGATCATCATCTACACAACAAGAGTGCACTTCTGGAGGAAGGAAGGGCAAGCATTCAGTGATAAGAGATAGAACCATCATAGGTGGGAGTTCTGGGAGTGCTTCAAGCCGTTATTCTTCTTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATTCCAAAGACTGATTGA 999 0.4585 MDQPNPPLSSKPKLASESPLHRFTPTSNRFRSSQLLRERESKGEGEKEDPSASRKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLTAEVNRLKTEHKALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRIMFPWTAIDHSVVISPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPGPIPSPCSMYVPYSTPTNNPVDPPPVLYASTSHVSNQRESFSKSSGDRRPSSDAERCSESHDVATELELKMPGSSSTQQECTSGGRKGKHSVIRDRTIIGGSSGSASSRYSSSQGLQDSSNSVGDIPKTD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4219g00008 332 MobiDBLite consensus disorder prediction 272 287 - -
Vium4219g00008 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 124 IPR036638 GO:0046983
Vium4219g00008 332 PANTHER TRANSCRIPTION FACTOR BHLH121 33 331 IPR044579 GO:0003700|GO:0006879
Vium4219g00008 332 Coils Coil 93 148 - -
Vium4219g00008 332 Gene3D - 51 129 IPR036638 GO:0046983
Vium4219g00008 332 MobiDBLite consensus disorder prediction 223 332 - -
Vium4219g00008 332 Pfam Helix-loop-helix DNA-binding domain 54 103 IPR011598 GO:0046983
Vium4219g00008 332 CDD bHLH_AtILR3_like 58 132 - -
Vium4219g00008 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Vium4219g00008 332 MobiDBLite consensus disorder prediction 1 87 - -
Vium4219g00008 332 MobiDBLite consensus disorder prediction 244 268 - -
Vium4219g00008 332 MobiDBLite consensus disorder prediction 33 87 - -
Vium4219g00008 332 SMART finulus 59 109 IPR011598 GO:0046983
Vium4219g00008 332 MobiDBLite consensus disorder prediction 300 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4219g00008 Vium-Chr4219 50101 54590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4219g00008 43 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 55.328 1.10e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4219g00008 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4219g00008 - - gmx:100818281 432.95