Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4219g00004 ATGCATTGGGAGCAGACAAAGTCATCTGGTATTGCAAATATTCTAGAAAGCGAGCTATTTATGGATGCTGCTTCCCTAGAGGAGTATATCAACAGAAAGACATTGGTTCGGCGGTTGAAGACAAAAGTCAAAATGTTTGGTGCAAATAAACGTCATCAAGTAGACAATACTATTTCTTGCACATCTAACATGTTGTCATCTTCTGAGTCATTGCATTCTTGGTCTAATGGAAGTCTACCAGGACATGCTTTTCAGAAAGGGCTCCATCCTTGCATTAATGTAACTCATTATGGTGCAGCATATAATAGACATGACTTATCAAAAGGAGGGCTGTCATCGATCCCAAAATGCACTGATTTGGATGTGCGTTCTGAGTATTCTGCTGCTTCTGTTGTTGGGGGAAGCCATTTGGAAACTAGCTCCAAGTCATTTGAAGCATCCAATCATTTTCTTGATTGTCCTTCTGAAGTCACGCAACCACCAACCAAAAGAAGAAGAGTGGATTCTGAAACTGAGTGCAAGGTGGAACAAATTACAAACCCAGTACCTGAAAGCAATACTTGGATAAAACATGATTCAAGCAATGGTACATTTGGACTGCCTCCTGGGACAGAACCAATCTTATATGAAGAGGAAATGCAGGACAGAAGCACATTCAACCAATCTGAGTCCAATGCTAGAAAGAAAGTCATTCCACCAAAATCTCAAGAAGAGGGAATGAACTCCACACATCCAACCACTAATACTGTTTCCTCAACAACTGAATCTTTAACAAGAAGTCCAATAGAGGAACACATTAGAAGTCTCAGAAAGCAAGATAATAATAAAGGTACAACGGATGGAGAATCAGGAAATGATACTCACAAATGCCAATTATGTTCATTGGCAACGCTGCACTTTGCCCCTAAGCCAATTTATTGCTTCTGTTGCGGCACCAGCATCAGGCATAATGCATGTTATTACTATAGAAAAGAAGAAGAGGACACACAAAATTGCTTTTGTCCTACATGCTATAGGAATGCCCGAGGTGGGAACATCACATTCAACGGGACAACTGTTTCCAAGACAGATCTTTGCAAAACTAAAAATGATAGACGATGTGAAGAAGCGTGGGTTCAATGCAGTAAATGCAAAAGTTGGCAGCATCACATATGCGCACTCTATAACAATACAAGAGATTTGGACAACAGTGCTGAATATATCTGCCTTTTATGCTGCCTAAACGAAAATAGAAATGATGTGCGTGTACCCTTTGATGCTAAAGACTTCCCGAGAACCATGCTCAGTGACCACATAGAGGGAAGGCTTTTGAAGCGTCTCGGTCAAATTGAAAGGAATAAGATTCCTGAGGGTTTTGTAGCAGACAATCTTTCTGTTAGGGTTGTGCTATCTGTGGACAAACATATTGAAGTGAAGAAACAATTTCTGGATATCTTTGAGGGGGATAATTATCCTGCAGAGTTTTCTTACGCTTCAAAAGTTATTCTTCTGTTTCAAAAGATTGATGGAGTGGATGTGTGCCTCTTTGCAATGTATGCTCAAGAGTTTGGATCAGAATGCGGCTATCCTAATCAGCGTTCTATATATATTTCATATCTCGATTCGGTTAAGTATTTTAGGCCGGAAATACATATCTCGGCTACAGAATCTCTCCGTACCTTCGTTTACCATGAAATATTGATTGGATATCTTGATTTTTGCAAGAAAAGAGGTTTTACAACTTGTTACATATGGTCCTGTCCACCTATAAAGGGAGAAGATTATATATTCTACTGTCATCCTGAATCTCAGAAAACTCCGAAAAGAGATAAACTACGACATTGGTATCATTCGGCTCTGAGAAAGGCTGTTGAACAGGATATTATTGTTGGTTTATCAAACATATTCGATTATTTCTTTGTTCCTACTGGAAAACGTGAATCCAAGGTAACGGCTGCTCGTTTGCCTTACTTTGACGGAGACTTCTGGTGTGGTGCTGCTATGGATAAAGCCAGCGAGATTGAACAGCATACTGGAGGAAACCGCGAAAAGATTCTGAAATTAATACCAAGCAGATCTTTGAAGTCGATGGGATGCGTCAATCTTTCCAAAGGAACTGCAAAAGATATTTTAGTAATGCAGAAGCTGGGACAAACCATATTACCTTTCAAGGAAGATTTTATGGTAGTTCAACTTCAGTACGTTTGCATCCACTGCCATAAAGTGATAGAGTGTGGAAAGCGATGGTTTTGCAAGGAGTGCAAGATATTTCAGGAGTGTGAAAGATGTCACACGTTTGATTCACACACTTCTGTAAAAGGCCAGCAGCACAAACTCTATCAGGTCCTTATGGAAGGCATCCTTCGTGATACAACTAAGGAGAAAGATATCATCATTAATAAGGGGTTATTTGATACCAGATATAACTTTCTTAGCTTTTGCCAAAGGAATAGATTTCAGTTTGATACACTTCGTCGAGCCAAGTATTCCTCAATGATGATCCTCCATTTTTTGAGCAACCCTACTACTACGACTGTGACTGATGGAATAGTTTGTCAAGTTTGCTGTAAACGCATTGATAGCCAGTGTTACTGGAAATGTGAGAATTGCCCCGAGTTCAATGTGTGCTCTGCATGCTATATCGCCAGAGGTGCACAATGTCATGAACACACGTTGAGTGAAACTTCTTCAGCTGCACTATCTCCTTCAGGGAGTGAAGAGTCAAAGCAGAACACAGCAGTGGAACTTCTGGATGTTATAAAGCACGCATCACAGTGTCATTCAATTCAAACTCAAGCATGCACCTATCCCTACTGCCTTAAAATAAGAAAGTTGTTTTATCATGCCAGTAGGTGTACTGTTCGAGTTTCTGGAGGATGCCAACCTTGCAAGAAGGTTTGGCAGGCAATAGCTTTACACTCAAGGACTTGTACAGACTCAGCATGTCGCATTCCTCGTTGCATGGATATGAAGAAGCACATGGTTGGCATCGCAATCTGA 2979 0.4045 MHWEQTKSSGIANILESELFMDAASLEEYINRKTLVRRLKTKVKMFGANKRHQVDNTISCTSNMLSSSESLHSWSNGSLPGHAFQKGLHPCINVTHYGAAYNRHDLSKGGLSSIPKCTDLDVRSEYSAASVVGGSHLETSSKSFEASNHFLDCPSEVTQPPTKRRRVDSETECKVEQITNPVPESNTWIKHDSSNGTFGLPPGTEPILYEEEMQDRSTFNQSESNARKKVIPPKSQEEGMNSTHPTTNTVSSTTESLTRSPIEEHIRSLRKQDNNKGTTDGESGNDTHKCQLCSLATLHFAPKPIYCFCCGTSIRHNACYYYRKEEEDTQNCFCPTCYRNARGGNITFNGTTVSKTDLCKTKNDRRCEEAWVQCSKCKSWQHHICALYNNTRDLDNSAEYICLLCCLNENRNDVRVPFDAKDFPRTMLSDHIEGRLLKRLGQIERNKIPEGFVADNLSVRVVLSVDKHIEVKKQFLDIFEGDNYPAEFSYASKVILLFQKIDGVDVCLFAMYAQEFGSECGYPNQRSIYISYLDSVKYFRPEIHISATESLRTFVYHEILIGYLDFCKKRGFTTCYIWSCPPIKGEDYIFYCHPESQKTPKRDKLRHWYHSALRKAVEQDIIVGLSNIFDYFFVPTGKRESKVTAARLPYFDGDFWCGAAMDKASEIEQHTGGNREKILKLIPSRSLKSMGCVNLSKGTAKDILVMQKLGQTILPFKEDFMVVQLQYVCIHCHKVIECGKRWFCKECKIFQECERCHTFDSHTSVKGQQHKLYQVLMEGILRDTTKEKDIIINKGLFDTRYNFLSFCQRNRFQFDTLRRAKYSSMMILHFLSNPTTTTVTDGIVCQVCCKRIDSQCYWKCENCPEFNVCSACYIARGAQCHEHTLSETSSAALSPSGSEESKQNTAVELLDVIKHASQCHSIQTQACTYPYCLKIRKLFYHASRCTVRVSGGCQPCKKVWQAIALHSRTCTDSACRIPRCMDMKKHMVGIAI 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4219g00004 992 Pfam Histone acetylation protein 455 666 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4219g00004 992 MobiDBLite consensus disorder prediction 236 259 - -
Vium4219g00004 992 Gene3D TAZ domain 896 989 IPR035898 -
Vium4219g00004 992 ProSiteProfiles Zinc finger TAZ-type profile. 899 983 IPR000197 -
Vium4219g00004 992 SUPERFAMILY RING/U-box 819 885 - -
Vium4219g00004 992 SMART KAT11_2 440 736 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4219g00004 992 PANTHER CBP/P300-RELATED 213 987 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4219g00004 992 MobiDBLite consensus disorder prediction 214 229 - -
Vium4219g00004 992 MobiDBLite consensus disorder prediction 214 261 - -
Vium4219g00004 992 SUPERFAMILY TAZ domain 899 984 IPR035898 -
Vium4219g00004 992 SUPERFAMILY RING/U-box 704 774 - -
Vium4219g00004 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 406 IPR013083 -
Vium4219g00004 992 Pfam TAZ zinc finger 909 980 IPR000197 -
Vium4219g00004 992 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 417 836 IPR031162 GO:0004402
Vium4219g00004 992 SUPERFAMILY FYVE/PHD zinc finger 354 408 IPR011011 -
Vium4219g00004 992 SMART TAZ_2 900 981 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4219g00004 Vium-Chr4219 23005 28236 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vium4219g00004 HAT_KAT11 3.2e-29 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4219g00004 K04498 - gmx:102664049 1072