Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4218g00012 ATGAAGAGGTCAAGGGATGATGCTTATATGAGTCCACAACATAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGAGTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTGGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGAGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACTGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTACCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCTCCCCAAAAGAAGCCTGTTGAGTTTGCAGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGACAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACTAAGTCCATCACTGAGGTTTATGAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACGCATTTTCTTCCTGATACTTCAGGAACAGCCTTTAATCACTATGCTTCTACTCGAAATCCTCTGCTTCGTGATAGGAGCTCTGCAATGCCAACACTGAGGCAAATGCATGTTGAAAAGAGAGAGAGGAACATTGGTTCACAAGGTGATCATGACTTCCGTGCTGATCATCCTGATCCAGAACATGACAGAGGTTTAATCAAGGCTGATAAGGATCAGAGGAGGCGTGGTGAGAAGGAAAAGGAAAGTAGAGAAGAGAAAGACAGGAGACAGCGGGAAAGGGATGACAGAGATTATGATCATGATGGTAGTAGGGAAAATTTATCTCACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTCTGGCATTGAACTGATGCATGATACTGATGAAAATTTTGGCATGCACCCTGTCTCATATGCTTGTGACGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGATTGGTTACCTTGACAAAGTGAAGGAGAAATTACAAAGTCCCGAGGATTACCAGGAATTTTTGAAGTGCCTAAACATCTACTGCAAGGAAATAATTGCCCGTCATGAATTGCAATCATTGGTGGGCAATTTGCTGGGAAATCATGCAGACCTTATGGAGGGATTTGATGAATTTTTGACTCAATGTGAAAAGAATGAAGGATTCCTTGCTAGTCTTCTGAAAAAAAAATCCTTTTGGCATGAAGGACATGGACCGAAACCAATGAAGGTAGAGGATAAGGACCGTGATAGGGATGATGGGGTGAAAGAAAGGGATCGTCGAGAAAGGGACAAATCCAATGCAACTGCTAACAAGGATGGTTCTGCTCCTAAGATGTCTCTATATGCCAGCAAAGATAAGTATTCAGGAAAGCCTATAAGTGAACTGGATCTTTCCAACTGTGAACAATGCACTCCTAGTTATCGCCTTCTTCCTAAAAATTACCTAATACCGCCAGCCAGCCAGAGAACAGAGCTTGGTGCAGAGGTGTTGAATGATTACTGGGTTTCTGTTACTTCCGGTAGTGAGGACTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAGGAACTTTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTGACAGCTCTAAATCTTAGATGCATAGAAAGACTATATGGTGATCACGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCATCGGAGTTTTTACTTTAAGCAGCAGGATACTAAAAGCTTGAGCACTAAAGTCTTACTGGCTGAAATCAAAGAAATTAGTGAGAAGAAAAGAAAAGAGGACGACGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACTTGGAATTTGCGTATCCTGATCCAGAGATCCATGAAGATCTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTAGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGAGTTCCGTCTCGATCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGATAGGAATAAGTCTGCCAAAAGTAGCGCTGAAGTTGTTGCCGGTGATGGTAGTCCTGTAATGAATCCTAAGAATTTAAACATAAATAGAAATGGGGATGAAAACTTTCCATTTGAGCAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATGCTAAGGGTAAAAAGGATAATCATCTTGATTCGGACAGCTTTGCACAAAAGACTGAAGCCTTAGGGAGTAATATGCAGCAGAGTAAAATGAATATAAATGCATCTATACCTGATGAAATATCAAGAGCCAATAAGCAAGATCATTCCACTGAACGGTTGGCGAATGCTGATGTCTCACTATCCTCGGGTGGGGAACAAAATAATAGAAGTACAAATGTGGATAACGCAACAGGACTTGCTGCTACTCCATCAAGACCTGGTAATATATCTTCCGTAGGAGGAGTTGGTTTAGCTTCATTAGAGGGTGCTGACTCTGCACGACCAGTTACATCAACAAATGTGGCCATCATTGAGGAATCGAAAGTTCACAGACATCAGGAAGAATCTGTGGGACACTTCAGATGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACTTTGAAGAGGACAATTTTGCAGTTTATGGACATACTAGTTCGGAGGCAGTTCATAAAGGAAACGATAGTAGCATTTCCCAACCATACCAAAACAGACATGGGGAAGTAGTTCGTGGTGAAGTAGGAGGAGAAAATGATGCTGATGATGAAGGAGAAGAAAGTCCCCATAGATCATTAGAGGATAGTGAAAATGCTTCAGAAAATGGAGATATTTCTGGCACAGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAACATGAGGAGGACGGTGGTCATGATCATGATGACAAGGCTGAGAGTGAAGGTGAGGCAGAAGGAATGGCTGATGCCAATGATGTTGAAGGGGATTGTGCCTCATTGCCATATTCAGAACGCTTTCTTGTCAATGTAAAGCCTCTGGCAAAATATGTTCCTCCGACGTTGCATGAGAAAGAAAGGATTGGTCGAGTCTTTTATGGAAATGATTCCTTTTATGTCCTATTTAGACTCCATCAGACATTGTATGAGAGGATACGGTCTGCAAAGGTTAACTCATCGTCTTCTGAAAGGAAGTGGAGGGCTTCAAATGATACAGACTCTACTGATCAATATGGCAGGTTTTTAAACGCCCTCTACAATTTACTAGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACGTTAGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAGCAAGCTGCTTCAATTATATGCATACGAAAAATCAAGAAAACCTGGAAGATTTGTTGATTTAGTTTGTCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCACCTTCACCTACCCAATTGTCTATTCAACTGATGGACTATGGATTTGATAAACCTGAAGTGACTACTGTATCAATGGACCCTAATTTTTCGGCCTATCTGCACAATGACTTCCTATCTATTGTCCCAGACAAAAAGGAGAAGTCTGGAATTTACCTGAAGAGGAATAAGCGCAAGAATGGCAGTGGTGATGAATTTTCAAGCCAGACCATGGATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGGCTGCATCTTAG 4098 0.4065 MKRSRDDAYMSPQHKRPMVSSRGEPSGQPQMMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGTAFNHYASTRNPLLRDRSSAMPTLRQMHVEKRERNIGSQGDHDFRADHPDPEHDRGLIKADKDQRRRGEKEKESREEKDRRQRERDDRDYDHDGSRENLSHKRKSACRAEDSGIELMHDTDENFGMHPVSYACDDKSSLKSMYSPVIGYLDKVKEKLQSPEDYQEFLKCLNIYCKEIIARHELQSLVGNLLGNHADLMEGFDEFLTQCEKNEGFLASLLKKKSFWHEGHGPKPMKVEDKDRDRDDGVKERDRRERDKSNATANKDGSAPKMSLYASKDKYSGKPISELDLSNCEQCTPSYRLLPKNYLIPPASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFAYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPSRSQGPEDTEDVVKDRNKSAKSSAEVVAGDGSPVMNPKNLNINRNGDENFPFEQSHSCKQWQPSGHAKGKKDNHLDSDSFAQKTEALGSNMQQSKMNINASIPDEISRANKQDHSTERLANADVSLSSGGEQNNRSTNVDNATGLAATPSRPGNISSVGGVGLASLEGADSARPVTSTNVAIIEESKVHRHQEESVGHFRCEREEGELSPNGDFEEDNFAVYGHTSSEAVHKGNDSSISQPYQNRHGEVVRGEVGGENDADDEGEESPHRSLEDSENASENGDISGTESADGEECSREHEEDGGHDHDDKAESEGEAEGMADANDVEGDCASLPYSERFLVNVKPLAKYVPPTLHEKERIGRVFYGNDSFYVLFRLHQTLYERIRSAKVNSSSSERKWRASNDTDSTDQYGRFLNALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDSKLLQLYAYEKSRKPGRFVDLVCHENARVLLHDENIYRIECSPSPTQLSIQLMDYGFDKPEVTTVSMDPNFSAYLHNDFLSIVPDKKEKSGIYLKRNKRKNGSGDEFSSQTMDGLQIVNGLECKIACNSSKAAS 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4218g00012 1365 Coils Coil 556 576 - -
Vium4218g00012 1365 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 424 468 - -
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 1053 1080 - -
Vium4218g00012 1365 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 1015 1084 - -
Vium4218g00012 1365 Pfam C-terminal domain of Sin3a protein 1127 1362 IPR031693 -
Vium4218g00012 1365 SMART hdac_interact2seq4b 487 587 IPR013194 -
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 770 784 - -
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 1015 1040 - -
Vium4218g00012 1365 SUPERFAMILY PAH2 domain 338 403 IPR036600 GO:0006355
Vium4218g00012 1365 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 762 839 - -
Vium4218g00012 1365 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Vium4218g00012 1365 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Vium4218g00012 1365 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 1 38 - -
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 949 971 - -
Vium4218g00012 1365 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Vium4218g00012 1365 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 949 981 - -
Vium4218g00012 1365 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 23 38 - -
Vium4218g00012 1365 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Vium4218g00012 1365 Pfam Sin3 family co-repressor 489 580 IPR013194 -
Vium4218g00012 1365 FunFam Paired amphipathic helix protein SIN3 332 405 - -
Vium4218g00012 1365 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 799 825 - -
Vium4218g00012 1365 PANTHER SIN3B-RELATED 38 1271 IPR039774 GO:0003714
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 886 918 - -
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 226 303 - -
Vium4218g00012 1365 MobiDBLite consensus disorder prediction 424 456 - -
Vium4218g00012 1365 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Vium4218g00012 1365 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4218g00012 Vium-Chr4218 39632 50634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4218g00012 28 119 WRKY Transcription Factor Family AT4G12020 60.638 6.27e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4218g00012 Sin3a_C 7.9e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4218g00012 K11644 - gmx:100781798 2201.4