Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4218g00001 ATGTCTTTCAATATCATGCTCCAATCCTCGCCCTTCCTCGCCCTTCTTTTTCTTTTATTTCTTCTTCACAGTTTCTCAATACCAACATGTCATTGCCAAACCACCACTTCTCCCCCTCAGAACATCGAAACTTTCTATCCAAATCAAACTTCGGCACCACAAAATCCTGAGACATCACCACAGACACAACAACCACCAGCTGCTGACACACCACCTGGCCGTGGTTCTTCCAGTGGTAAGATAGCCAAGGCGGTGGCTGCAACTGCAGCCAGCACCCTAGTTTTTTCTGGTTTAATTTTCTTTCTGGTGCAGAGGTTCTTGAGGGCCCGAAAGAGAAAGAGAGAGGTGATAACTAACACTGCTTCTGGTGGAGATAACCGTGTTGTGCCTCAGGGAAATGTGTTTGAGAGAATTGATGGAAATGTGAAGGGCTTGATTGTGGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAGCTTGAAGGGAAGAACTCTGACAAGGATCTATATAAGGAGGTTTTGAGTAGTCCCAGAAACAAAGAAAAAGAAGATGGTGATGGTGAAAATCAAGCCAAGAAGTCCAAGTCCATCCAAGAAGTTCCTCTCCTTAGAGGGAAATCTTCAACTTCCCACTTGAATGTATCTCCAGAAGAGGATGAGCCATACAGATTTTCCCCACTTCCTTCTCCTCCTGCTTCTTATGTTTCTGTCTCTGCTCCCACTCCTTCCACTCTTCCTTCATCAGCTGGGGTTGTTATCAAGGGTGCTCAGAAACCAGACTCTCCAACTCAACCCTCAACTCCACCCCCTCCCGTTTCACCATCAACACCTTCATCCTCTACTTCTGTTTCAGCAGTTCCGAAAGCAAATAATCCTGCGCCGGCACCTCCCCCTCCCCCAGTCCCAGCCCGAAGGAGTCCAGCACCACCTCCTCCTCCAGCCTCATCAAAAGCACCACCTGCTCCCATTCAAATTCCAGCTATTAAGCAAGGAAACTCTTCAGGAAAAGGCATCCCAGAAACCAGCAATGACCAAGTGAAGCTGAAGCCTCTGCATTGGGATAAGGTCAATACTAATAATGCTGATCACTCCATGGTTTGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGATCAAGATCTCATGGAAGCTCTCTTCGGTTATGTCGCCACCAACAGGAAATCTCCCAAAGGAAAAAGTCACTCAGCCATTCCAAGCAACGATGCCTCAGCTTCATCTGCAAAAGTTTTCCTTCTTGACCCGAGAAAATCACAGAACATTGCTATTGTTCTCAAATCTCTTGCAGTCTCACTAGGTGAAATTGTTGATGCACTCACTGATGGTATGGGCCTCAAACCAGATACTCTTGAAAAGCTTGCTAGAGTTTCCCTAACAGAAGAAGAGCAATCTCTCATCCTTGAATACAAAGGAGACCCGGCAAGACTTGCAGCAGCTGAATCTTTCCTTTATAATCTCCTCAAAGCTGTTCCCTCAGCTTTTAAGCGCTTGAATGCCATGCTATTCAGGTTGAACTATGACTCGGAGATTCAAGAAACCAAGGAATCTCTGCAGATCATTGAACTGGGTTGTAAGGAGCTTAAAAGCAAAGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTAAAGGCAGGAAACAGAATGAATGCAGGAACTGCAAGGGGCAATGCACAAGCTTTCAATTTGGCTTCTCTGAGAAAACTCTCTGATGTTAAGAGCAGCGATGGAAAAACCACATTACTTCACTTTGTGGTTGAAGAGGTAGTCCGTTCTGAGGGAAAAAGGGTTGCTCTTAACCGCAATGGCAGCCTGAGAAGTAGCAGCAGTAGGAGCAGCAGCAGTAGCAATGGAAACTATGAGAACAATGTTGCTTCAAATGAACTGATAGAAAGGGAATATACGACACTAGGATTGCCAATTGTGGGAGGGATCAGTTCTGAGTTATCCAATGTTAAGAAAGCAGCACAAATAGATTATAACAATTTAGTTAATTCAATCTCGGCCCTCTCAACCCGGTTAGTCAAAGTTCAAGAACTGGTTTCCTTGTGTGGAAATAACGAAGAAGGACATTTTGTAAAAGAAATGGATCATTTTCTTAGAAATGCTGAGGAAGAGCTGAAACTATTAAGGGAGAAGCAAACAAGTGTATTGCAGCTCATCAAGAAAACAACACAGTACTATCAAGGAGGAGCTTCAAAAGAAACTGCAGAAGACAATCTTCATTTGTTTGTCATAGTGAAGGATTTTCTGGGAATGGTTGATCAAGTATGCATTGAGATTGCACGTGATATGCAGAAGAGAAGATTTCCTCCTAAGGCCATTTTTGGGTAG 2346 0.4429 MSFNIMLQSSPFLALLFLLFLLHSFSIPTCHCQTTTSPPQNIETFYPNQTSAPQNPETSPQTQQPPAADTPPGRGSSSGKIAKAVAATAASTLVFSGLIFFLVQRFLRARKRKREVITNTASGGDNRVVPQGNVFERIDGNVKGLIVDEDGLDVIYWRKLEGKNSDKDLYKEVLSSPRNKEKEDGDGENQAKKSKSIQEVPLLRGKSSTSHLNVSPEEDEPYRFSPLPSPPASYVSVSAPTPSTLPSSAGVVIKGAQKPDSPTQPSTPPPPVSPSTPSSSTSVSAVPKANNPAPAPPPPPVPARRSPAPPPPPASSKAPPAPIQIPAIKQGNSSGKGIPETSNDQVKLKPLHWDKVNTNNADHSMVWDKVDRGSFRVDQDLMEALFGYVATNRKSPKGKSHSAIPSNDASASSAKVFLLDPRKSQNIAIVLKSLAVSLGEIVDALTDGMGLKPDTLEKLARVSLTEEEQSLILEYKGDPARLAAAESFLYNLLKAVPSAFKRLNAMLFRLNYDSEIQETKESLQIIELGCKELKSKGLFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSSDGKTTLLHFVVEEVVRSEGKRVALNRNGSLRSSSSRSSSSSNGNYENNVASNELIEREYTTLGLPIVGGISSELSNVKKAAQIDYNNLVNSISALSTRLVKVQELVSLCGNNEEGHFVKEMDHFLRNAEEELKLLREKQTSVLQLIKKTTQYYQGGASKETAEDNLHLFVIVKDFLGMVDQVCIEIARDMQKRRFPPKAIFG 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4218g00001 781 MobiDBLite consensus disorder prediction 327 341 - -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 604 625 - -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 173 346 - -
Vium4218g00001 781 Gene3D Formin, FH2 domain 358 775 IPR042201 -
Vium4218g00001 781 ProSiteProfiles Formin homology-2 (FH2) domain profile. 338 781 IPR015425 -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 262 276 - -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 201 215 - -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 605 625 - -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 38 79 - -
Vium4218g00001 781 SUPERFAMILY Formin homology 2 domain (FH2 domain) 351 773 - -
Vium4218g00001 781 PANTHER FORMIN-RELATED 16 769 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium4218g00001 781 Pfam Formin Homology 2 Domain 342 758 IPR015425 -
Vium4218g00001 781 Coils Coil 697 724 - -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 38 71 - -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 290 320 - -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 173 193 - -
Vium4218g00001 781 SMART it6_source 338 773 IPR015425 -
Vium4218g00001 781 MobiDBLite consensus disorder prediction 231 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4218g00001 Vium-Chr4218 7323 10327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4218g00001 314 773 FH2 protein (formin) Gene Family AT1G70140 57.235 5.57e-170 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4218g00001 - - gmx:100783219 1024.62