Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4217g00001 ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGCTTGGTTGCCATTGGAGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCTGAGTTAGCTGATGTTATCCCTGTGGTCAAGACATCAATTGGGGGTACTCGGATTATTGGTCGTCTTTGTGCCGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGATCAAGAACTTCAGCATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAACGTATTGACGAAAGGCTATCTGCTCTGGGGAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACCATAGCAGGCAACATTCTTGTTGGTAGTTACTGTGCCTTCTCCAACAGGGGTGGTTTGGTTCACCCTCATACTTCCATAGAAGACCTGGATGAGCTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTTAACCGGGGCAGTGAAGTAATAGCAGCTGGAATGACAGTTAATGATTGGACAGCATTTTGTGGTTCAGACACCACTGCAACAGAGCTATCTGTAATTGAGAGTGTTTTCAAGCTGAGAGAAGCTCAGCCTAGTGCCATTGTGGACGAGATGAGGAAATCCCTCGTTGATACCTATGTCTGA 738 0.4485 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLVDTYV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4217g00001 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Vium4217g00001 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0042256|GO:0043022
Vium4217g00001 245 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Vium4217g00001 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Vium4217g00001 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Vium4217g00001 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Vium4217g00001 245 SUPERFAMILY Pentein 1 224 - -
Vium4217g00001 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Vium4217g00001 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Vium4217g00001 245 Gene3D - 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4217g00001 Vium-Chr4217 7093 10901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4217g00001 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 92.245 6.98e-175 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4217g00001 K03264 - gmx:100800352 481.87