Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4214g00002 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGAAGAGAAAGCGACGGTGGTGGAGGTTCTGGGTCGCGGCGCGTTTGATTACTTGGTGGCGAATTCGGTTTCTAACGAGAATCTGTTAATGGCGTTTGGGAGCGGCGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGTACTAACGCGTCGAACTTCAGTTGGAACTACGCGATCTTCTGGCAAATTTCGCAGTCCAAGTTTGGGGATTGGGTTTTGGGGTGGGGAGATGGTTGTTGCAGGGAACCGCGGGAGGGAGAAGAGAGCGGAGAAGTGAGAGGGAGAGGGGTTGTTGCTGACGACGAGAAGGTGCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACATGACTTTTGGGGGTTCTGACGAGGACAATTATGCTTTTGGGTTGGACCGTGTTACTGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGTGGACTAGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAGCATTTGTGGCTTTCGGATGTGTTCAAATCTAGTTTTGATTACTGTGTGAGGTCTTTTTTGGCCAAATCTGCTGGAATTCAGACTGTTGTTTTAGTGCCTACTGATATGGGGGTGGTGGAGATGGGGTCTGTGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCAGGCTTTGAAGTCTGTGTTTTCTGCACAGGCATCGTTGGTCCCTCCCAGGATTAAGCCAATTACACCATTTGATTTGGTGAGTGAGAAGAGAGATGATAATGCAAATGCCCCTTTTTCTGGTGTGGCAATTGGGGATAAGGAAAAGAATAACAGCAGCAATGGTAGTAATAATAGAGTAGAAGGAAACGGAGTTCCAAAGATTTTTGGGCAAGATTTGAACAGTGTGACTCAATTCAGAGAGAAACTTGCTGTGAGGAAAATGGAAGAGAGGCCGAGGGCGTGGGGAGCTCATCCCAATGGGAATAGTGTTGGTTTTCCAAATGGTATCCATGGTTCTGGTTGGGGGGCCGGTCAAGTTGTGAGACAGCTTGGTCCTCCTGAAATTCATGCTCCTAGGTTGTCCACCTCCGGTGCATTGTCGGTGCCGGAGCTGGCCAATGGCACGAGGCATGATTTTGTGCATAACAATTATCAGCACCAGCAACAGCAACGGAAGGCTCAGATGCAAATTGATTTCTCAGGAGCAACTTCAAGGGCTTCAGGGAGATCAATCATTGCGGAATCTGAGATTTCTGATGTTGAGGCATCGTGCAAGGAGGAGAGAACGAATGTTGCCGATGACAGGAGGCCGAGGAAACGGGGAAGGAAGCCGGCCAATGGAAGGGAGGAGCCCCTCAACCATGTGGAGGCAGAGAGGCAAAGGAGGGAGAAGCTAAACCAGTGGTTCTATGCCCTGCGTGCGGTTGTTCCAAATATCTCAAAGATGGACAAAGCATCTCTATTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACGATGGAGTCTGAGAGAGAGAGATTTGGAAGCACCTCTATGGATGGATCAGTGGTGGAGGCCAATGCAAGATCAGAAAATCATAGTTATGGAATTTCTGATGTGAATGTTGAAGCTGCACAAGATGGGGTGGTAGTAAAGGTGAGCTGCCCTATTGATGTTCACCCGGTTTCAAAAGTCATTCAAACCTTCAAAGAAGCAGATATTGGTGTTGTTGATTCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAATCTCAGGGACCTGATCAGCTGACCAAGGAAAAGTTGATTGCATTGTTTTCCAAAGAATCCAACCCCATACAGACATTGTGA 1878 0.4782 MKIEVGLGGVWNEEEKATVVEVLGRGAFDYLVANSVSNENLLMAFGSGENLQNKLSDLVERTNASNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPREGEESGEVRGRGVVADDEKVQRMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWLSDVFKSSFDYCVRSFLAKSAGIQTVVLVPTDMGVVEMGSVRMVGESFELLQALKSVFSAQASLVPPRIKPITPFDLVSEKRDDNANAPFSGVAIGDKEKNNSSNGSNNRVEGNGVPKIFGQDLNSVTQFREKLAVRKMEERPRAWGAHPNGNSVGFPNGIHGSGWGAGQVVRQLGPPEIHAPRLSTSGALSVPELANGTRHDFVHNNYQHQQQQRKAQMQIDFSGATSRASGRSIIAESEISDVEASCKEERTNVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQWFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGSTSMDGSVVEANARSENHSYGISDVNVEAAQDGVVVKVSCPIDVHPVSKVIQTFKEADIGVVDSKLTAANDTVFHTFVVKSQGPDQLTKEKLIALFSKESNPIQTL 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4214g00002 625 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 239 IPR025610 -
Vium4214g00002 625 Coils Coil 494 521 - -
Vium4214g00002 625 PANTHER MYC 39 613 IPR045084 GO:0003700|GO:0006355
Vium4214g00002 625 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 455 504 IPR011598 GO:0046983
Vium4214g00002 625 Pfam Helix-loop-helix DNA-binding domain 459 505 IPR011598 GO:0046983
Vium4214g00002 625 MobiDBLite consensus disorder prediction 269 298 - -
Vium4214g00002 625 MobiDBLite consensus disorder prediction 278 293 - -
Vium4214g00002 625 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 458 518 IPR036638 GO:0046983
Vium4214g00002 625 CDD bHLH_AtAIB_like 452 517 - -
Vium4214g00002 625 SMART finulus 461 510 IPR011598 GO:0046983
Vium4214g00002 625 Gene3D - 448 520 IPR036638 GO:0046983
Vium4214g00002 625 MobiDBLite consensus disorder prediction 432 464 - -
Vium4214g00002 625 FunFam Transcription factor bHLH13 448 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4214g00002 Vium-Chr4214 265 8932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4214g00002 10 624 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.751 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4214g00002 bHLH-MYC_N 3.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4214g00002 - - gmx:100807078 977.622