Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4210g00005 ATGGCAGAACATTGTTATGTGGAAACAGACCCAACTGGTCGCTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGGGCAATGAAGACTGTGTACAAAGCAATTGATGAGGTTCTTGGAATTGAGGTAGCATGGAACCAAGTCAGACTCAACGAGGCTCTTCGCACTCCTGAAGATTTGCAGAGACTTTACTCAGAGGTTCATCTCCTCAGTACCCTCAAGCATCAGTCCATCATAAGATTCTACACTTCTTGGATTGATGTTGATAACAGGGCCTTCAACTTTATCACAGAATTGTTCACATCAGGGTCACTTAGAGAATACAGGAAGAAATATGAGCGTGTTAGCATACAAGCTATAAAGAATTGGGCTCGCCAAATCTTACAAGGTCTTGTTTATCTACATGGCCATGATCCACCAGTTATACACAGGGACCTTAAATGTGATAACATATTCGTTAATGGTCATCTTGGACAAGTAAAAATTGGTGACCTAGGACTTGCTGCAATTCTTCGTGGATCCCAATCAGCACACAGTGTCATAGGTACCCCTGAGTTCATGGCACCAGAGTTGTACGAGGAAGAATACAATGAACTTGCTGATGTGTACTCATTTGGCATGTGTGTGTTGGAAATGCTTACATCGGAATATCCATATAGTGAATGTTCCAATCCAGCCCAAATCTACAAGAAAGTGACATCGGGAAAACTACCAATGGCGTTTTTTCGGATTGAAGACATGGAAGCACAAAGGTTTATTGGAAAATGCTTGCTACCTGCAGAAAAGAGGCCTTCGGCAAAAGAATTGTTGCTTGACTCGTTTCTTGCATCTGATGATCCATCATCAACAACGAAATTTCCAATTCAGAAGCCATTTTTAAATGCCACTGAGATGGAGAAACTGCAATTAAATGATGATCTTCCGAGGACTGGAATGAAAGTGATAGGAAAACTGAATCCTGAAGATGATACAATCTTTCTCAAAGTACAAATTTCTGATAAGAATGGTTCTGTTAGGAATGTATTCTTTCCCTTTGACATTTTCAATGACACCCCTATTGATGTTGCAACTGAAATGGTGAAAGAGTTGGAGATTTCTGATTGGGAACCTTTTGAGATTGCAAATATGATTGATAGAGAGATATCTGCTCTGCTACCTCAGAAGAGGCAAACTAGCTGTTCAGATGCCTTTCACACATTCAGTTATATAGATGATGATGATTGTGATGATAATGATGCACCTCATCATCATTTTCGCTCCTTCTCTTCAAGTTCATCATTCCAAGAATCTATGCCAGATTTTGTCAGTAATGCTGAGGAAATATCAACTGGATATTATTGGCTCCATGATGATTCGCATGATGATACCAGTTCACGATGCTCTTCACAGGGGACATATTCCAACCTGAATTACTCTTCTGTGGATGATCATCAGGATCAGTACAATATGCCTTCTTTGAGAAAAGATAAACTTCCAATCATGAAGAGTCACAGCAAGGGCAAAAAGGCTTCCCCTGGCGAAGACTTGAGCAATTTCAACCAATGTAAACTCATGGCAGGATCACAGGTTCCTTTTAATAGTAAAATTAAGATGATGATGAACAATCAAAGATTAACAAGGAACAGGTCATTGATTGATATAAGGAGCCAACTATTACACCGATCACTGGTTGAGGAGGTCAACAAAAGAAGGTTGTTCAAGACAGTTGGTGCTGTAGAAAATATTGGATTTCAGGCACATTGTGATGTTACAACAAAAAGGTCACATCATGTATCTGCTGCTAGGAATGAGAACTGTTCAAGGAGGGGCAAGGGGGAAAAAAATAAGAGATGA 1830 0.4005 MAEHCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEALRTPEDLQRLYSEVHLLSTLKHQSIIRFYTSWIDVDNRAFNFITELFTSGSLREYRKKYERVSIQAIKNWARQILQGLVYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQSAHSVIGTPEFMAPELYEEEYNELADVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPMAFFRIEDMEAQRFIGKCLLPAEKRPSAKELLLDSFLASDDPSSTTKFPIQKPFLNATEMEKLQLNDDLPRTGMKVIGKLNPEDDTIFLKVQISDKNGSVRNVFFPFDIFNDTPIDVATEMVKELEISDWEPFEIANMIDREISALLPQKRQTSCSDAFHTFSYIDDDDCDDNDAPHHHFRSFSSSSSFQESMPDFVSNAEEISTGYYWLHDDSHDDTSSRCSSQGTYSNLNYSSVDDHQDQYNMPSLRKDKLPIMKSHSKGKKASPGEDLSNFNQCKLMAGSQVPFNSKIKMMMNNQRLTRNRSLIDIRSQLLHRSLVEEVNKRRLFKTVGAVENIGFQAHCDVTTKRSHHVSAARNENCSRRGKGEKNKR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4210g00005 609 MobiDBLite consensus disorder prediction 470 508 - -
Vium4210g00005 609 MobiDBLite consensus disorder prediction 585 609 - -
Vium4210g00005 609 Coils Coil 607 609 - -
Vium4210g00005 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 581 - -
Vium4210g00005 609 SUPERFAMILY Protein kinase-like (PK-like) 17 306 IPR011009 -
Vium4210g00005 609 Gene3D Transferase(Phosphotransferase) domain 1 99 280 - -
Vium4210g00005 609 ProSiteProfiles Protein kinase domain profile. 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4210g00005 609 FunFam probable serine/threonine-protein kinase WNK9 99 279 - -
Vium4210g00005 609 Pfam Protein kinase domain 20 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4210g00005 609 SMART serkin_6 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4210g00005 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vium4210g00005 609 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Vium4210g00005 609 FunFam Probable serine/threonine-protein kinase WNK1 1 97 - -
Vium4210g00005 609 CDD STKc_WNK 14 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4210g00005 Vium-Chr4210 32826 37281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4210g00005 6 585 MAP Kinase Kinase Kinase AT5G58350 59.932 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium4210g00005 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4210g00005 K08867 - gmx:100272203 1045.03