LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4210g00004	ATGGGGAACAACAGGTTTAAGCTGTCAGATATGATGCCAAATGCTTGGTTTTACAAGCTCAAAGATATGAGCAGATCAAGAAAGAGAAATGGTTCTCATGTAACGAAGAGTAAAGTATCTTCACCAACAACATCTCAAAGGTCGGTGCAAAGATATTCACACTATTTCTCCTCTGAGCCGATCAGAGCTGGTAAGCTATACAACACTCCCATTCACACCAGAGACTTGGACATGCCATTCACTGATTCACCTAGAACGTCATCCAAGAGAAGGACTAGGAGAAAAACCATTTACAAGCCTTCTCCCACTGTTGTTTCTTCGTCTTTCATACCAACTTCCAACTATGATTCCACCAATCATTGGATCAAACCATACCAAGATCAGTCACCAGATTACGATGTGTCTTCAGTTGAAAGCTCTTCTGAATCTGATCTCCATGAATATGCTTATTCTGAGTCTGAATGTGACAGCTTTTCTGTTCCTGATTTACTTAATGGAATGGCCCCTAATGGCAGCTGCAGAGTTAGCTCTTCCACTAATGACATCATCATTGACATGAACAACGACTCCTTCCTTGGGAACTCTGAAAACCAAGATGGGTTTGATGCGATTTCACAGCTGGGTCTTGCTCCAATAATGACAAAGCCAGTGAAGTTTGATGACAAGGTCATTGAAGCCACTGAGTTGAGAAGTTCAACTGAATGGGATGAGCTGCAGGATGATCAGTCTTTCTCAATTGAAATTAACATAGAGGAAGGAAACAGAACTCAAAGGAGGAGAAAAAGCAGTCACAGAAAGCCCTTCGCTAATTCTTCTGGCATAAGGCTTAGAATCAATTCTCCAAAATTTGCTAGCAGAAAAATTCAAGCCTGTGCAAGAAGGAGTGTGTCATCCACTGCAAGCAGAGCTTCAAGGGGCACAGGCTTTCCTGATGGTTTTGCTGTTGTGAAGTCCTCATTTGATCCACAGAGTGACTTCAGGGAATCAATGGTGGAGATGATTGTGGAGAACAATATCCGAGCATCCAAAGATTTGGAGGACCTACTTGCCTGCTACCTTTCCCTCAATTCAAGTGAATACCATGATCTCATTGTTAAAGCATTTGAGCAAATTTGGTTTGACTTTGCTCAACTTAGAATGTAA	1143	0.4182	MGNNRFKLSDMMPNAWFYKLKDMSRSRKRNGSHVTKSKVSSPTTSQRSVQRYSHYFSSEPIRAGKLYNTPIHTRDLDMPFTDSPRTSSKRRTRRKTIYKPSPTVVSSSFIPTSNYDSTNHWIKPYQDQSPDYDVSSVESSSESDLHEYAYSESECDSFSVPDLLNGMAPNGSCRVSSSTNDIIIDMNNDSFLGNSENQDGFDAISQLGLAPIMTKPVKFDDKVIEATELRSSTEWDELQDDQSFSIEINIEEGNRTQRRRKSSHRKPFANSSGIRLRINSPKFASRKIQACARRSVSSTASRASRGTGFPDGFAVVKSSFDPQSDFRESMVEMIVENNIRASKDLEDLLACYLSLNSSEYHDLIVKAFEQIWFDFAQLRM	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4210g00004	380	MobiDBLite	consensus disorder prediction	72	96	-	-
	Vium4210g00004	380	MobiDBLite	consensus disorder prediction	250	271	-	-
	Vium4210g00004	380	PANTHER	TRANSCRIPTION REPRESSOR OFP7-RELATED	108	375	IPR038933	GO:0045892
	Vium4210g00004	380	MobiDBLite	consensus disorder prediction	35	54	-	-
	Vium4210g00004	380	Pfam	DNA-binding domain	1	44	IPR025830	GO:0003677
	Vium4210g00004	380	Pfam	Transcriptional repressor, ovate	319	374	IPR006458	-
	Vium4210g00004	380	NCBIfam	uncharacterized plant-specific domain TIGR01568	313	374	IPR006458	-
	Vium4210g00004	380	ProSiteProfiles	OVATE domain profile.	315	374	IPR006458	-
	Vium4210g00004	380	MobiDBLite	consensus disorder prediction	27	54	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4210g00004	Vium-Chr4210	29543	30981	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	OFP	Vium4210g00004		Ovate	7.7e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4210g00004	-		-	gmx:100780926	625.165