Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium420g00003 ATGTACACATCGAGGAAGAAAATTCACAAGGATAAGGATGCAGAGCCCACTGAACTTGAAGAGACAGTTGCACAGTACTTATTTGACTTGGAGAATACCAACCAGGATCTGAAAAGTGACTTGAAGGATCTCTATATTAATCAAGCAATTCAAATGGATGTGGCCAATAATCGCAAGGCTGTAGTCATCTATGTGCCTTTCAGATTGAGAAAAGCATTCCACAAGATTCATCTCCGACTTGTGAGGGAGTTGGAGAAGAAATTTAGCGGGAAGGATGTTATTATGATTGCCACAAGGAGGATCGTGCGGCCACCAAAGAAGGGCTCTGCCGTTCAGCGTCCCAGGACCCGGACATTGACTGCAGTTCATGATGCCATGCTAGAGGATGTTGTATATCCTGCAGAGATTGTTGGAAAAAGGGCCAGATATAGAATTGATGGCTCAAAAATAGTGAAGGTTTTCTTGGATCCCAAGGAGCGCAATAACACCGAGTACAAGCTGGAGACTTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGATTATCCAGGCACAGAAGCCTGA 576 0.4358 MYTSRKKIHKDKDAEPTELEETVAQYLFDLENTNQDLKSDLKDLYINQAIQMDVANNRKAVVIYVPFRLRKAFHKIHLRLVRELEKKFSGKDVIMIATRRIVRPPKKGSAVQRPRTRTLTAVHDAMLEDVVYPAEIVGKRARYRIDGSKIVKVFLDPKERNNTEYKLETFSGVYRKLTGKDVVFDYPGTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium420g00003 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vium420g00003 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vium420g00003 191 Coils Coil 27 47 - -
Vium420g00003 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium420g00003 Vium-Chr420 17235 19353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium420g00003 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 80.105 1.03e-113 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium420g00003 K02993 - gmx:100305484 361.303