Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium419g00002 ATGGCAAAACAGCAAAACCAGGGAAAAGGCCAAGAGAGGGAATTGGAACTCGAAAGTGACGAGTCTGAGGCTGAGATTGAGGCCCCATTGCCTCTAACTGTGACCTCTCGGGCTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTGGTTCGTAAGCGCACTGCAAAACATCGTCCTTCTGGCTTCCCTCATCGCACTTCCATCACCATGTCGTCTACTTCTTGCGTTAGCGAACGGTTGGAGGATCCAAAATTGGAGTTACACCCGGATCAGACAGAAATTAGATTGTGGGAGAGGCTTGGGAAGGCTGCAATGTTGGACATTGAGTCGAGCTCTTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACGGTAGTAGCAATGAACAATCCGAAGATGAGATGAACAAAGCTCTCGAGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATCTGCCTGGGAATGCCGATATTTATCCAAAAGAAGCAGCAGCAGTTATAAAGATATCACCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTACGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGTGTAGAGTCATTCACAATACCAGTCATGAATGGCAACAAATAAAGGAAGCTGCGGAAAGAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGCGAGGTGACATGTTTTGAACTTTTGGAAGCACTCGAGCTCAGCCGGTGTCTCTTTTTTATGAGTTATGTACACGGTTCACCCTTGCTTGAAAGCTCTACTGCATTCAAGTCAAAGGAATCTGCAGAAAGAACATCAGAAGCTCTTGGCAGGGTGCTGATGCTGGACCTTGTCATCAGAAATGAAGATAGGTTGCCTTGCCGTGAGCTTAGATGGCGTGGGAATCCAGCGAATTTGTTGTTGGCTGGAAAGACTATCTGTGCAAATACAGATGTGCTAGAAGCCGCTGTTGATTCTGCAATTGACCGATATAGACCAAAGATGATATGGGCTTTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCGATTCTCACGATCCTGGTTTGATATCACATTCCCCTGATCTTTCAGATATCTCAGAATCTCCAATATCTCTTGACATCAACCATATAAGTCAAACATCTGAAGAATCACTGTCTCCCGACATTAACATAATAGCCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTACCCTAAGTTGATTGAGTTGTTACTCAACAGTTCTGAATTTGCCTCAAACCTGATATATGATGTAACTGGAGGGAAATTAGGATGTCCTCCATCAGAAGACATGGACAAAACTGATATATATGCGAACGATATAATGTCTGTAGTTCATGCGTTCCGCGCTGGTTTCCGCGCTGCTCTCAGGGATCTGCAGGGATTTCACATATTCCTACTCACACTTCACCAAAGACTTGATACCTTGTTACGATCATTTATGAACATTATGAGCAAAATATCTTTGGGAGAATTTGACAAAGAAGATGCTGTAGTTCCTGACTCACCTTCACTAGCAGTTGGTGGGCATTTTTACTCGCCATCATGTAAAGAGAGGCTTGGTAATGATAACCATCATGATTTGATTGATTCAGAACCACAGAGAACTGCTTCAAAAGCATCACCTTCAGGCAACAGAGATTGCAGTGACTTTACTCCTACCCCAAGAGAATCTTGCCATGGAAAGTTCTATAGAGGAAATGGGGAACCACTGCGTAGTCTCCGTTTGACTACTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCCAGTAGAGAATTGGAACAATGGAATGAAATGCTTAAAAGCGATGCCATCAAACTATGTCAGGATAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACTGTGCTGTTGACGCATATGAACTTAAGATACGACTTGAGCATATTATCGAGAGAATTGCATTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATCGGTGGAGCATTGGCTGCAAGATCTGTTTACACACTGCAGTACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTATAAGAATTTCTCTGTATGTGATAGTGATGATTACAACATCAGCGGCATATTTGAAGAAGCATGTGATTTGATAGATCATGTTGAACAAACAGGTCAAAAAGTCTTAGTTCACTGCTTTGAGGGGAAAAGCCGAAGTGTTACATTGGTCCTCGCATACTTAATGCTCAGGAAGAAGTATACTTTATTAGAAGCATGGCAAGCTTTGAAGCGAGTTCACTGTCGAGCACAACCCAACGACGGTTTTGCAAAGACCCTATTGGACTTAGATCAGAAACTACATGGAAAGGTTTCGATGGAATGGCATCAGCGAAAACCAATGATGAAAGTTTGCCCAATATGTGGGAAGAATGCTGGGCTAAGCAGTAGTTCACTCAAGCTCCATCTGCAGAAATCACATAGAAAGCTGTCCTCTGGAAGTGTAGATAGCGCCATGACTATGGAAATCGAGAAAGCTTTGACAGCTTTGAAGATTAGCCGTGGAGGGAGTGTCAGCCCCACACAAAGATAA 2745 0.4313 MAKQQNQGKGQERELELESDESEAEIEAPLPLTVTSRALYMLGDITAGPAFKFTQWLQLVRKRTAKHRPSGFPHRTSITMSSTSCVSERLEDPKLELHPDQTEIRLWERLGKAAMLDIESSSFSWDMLSSLHHTEHGSSNEQSEDEMNKALEVTVNSGGVVFFAFFNLPGNADIYPKEAAAVIKISPSRMATQSERLGYEFAKWLGVQTPQCRVIHNTSHEWQQIKEAAERAREAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLESSTAFKSKESAERTSEALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLAGKTICANTDVLEAAVDSAIDRYRPKMIWAFQKERRSTSVDCRLDSHDPGLISHSPDLSDISESPISLDINHISQTSEESLSPDINIIAIDSGVPRRPPAGKRANDQVNYPKLIELLLNSSEFASNLIYDVTGGKLGCPPSEDMDKTDIYANDIMSVVHAFRAGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNIMSKISLGEFDKEDAVVPDSPSLAVGGHFYSPSCKERLGNDNHHDLIDSEPQRTASKASPSGNRDCSDFTPTPRESCHGKFYRGNGEPLRSLRLTTKLRDFHKFAKVDAESSRELEQWNEMLKSDAIKLCQDNNFNPGFFEGSDNNCAVDAYELKIRLEHIIERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYPDLFEYKNFSVCDSDDYNISGIFEEACDLIDHVEQTGQKVLVHCFEGKSRSVTLVLAYLMLRKKYTLLEAWQALKRVHCRAQPNDGFAKTLLDLDQKLHGKVSMEWHQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIEKALTALKISRGGSVSPTQR 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium419g00002 914 SUPERFAMILY Protein kinase-like (PK-like) 55 431 IPR011009 -
Vium419g00002 914 Gene3D Protein tyrosine phosphatase superfamily 673 841 IPR029021 -
Vium419g00002 914 MobiDBLite consensus disorder prediction 571 589 - -
Vium419g00002 914 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 764 816 IPR000387 GO:0016311|GO:0016791
Vium419g00002 914 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 19 914 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vium419g00002 914 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 695 840 IPR029021 -
Vium419g00002 914 Coils Coil 219 239 - -
Vium419g00002 914 MobiDBLite consensus disorder prediction 559 590 - -
Vium419g00002 914 FunFam Dual specificity protein phosphatase PHS1 667 841 - -
Vium419g00002 914 Gene3D - 270 375 IPR036940 -
Vium419g00002 914 Pfam Actin-fragmin kinase, catalytic 103 417 IPR015275 -
Vium419g00002 914 Pfam Dual specificity phosphatase, catalytic domain 716 836 IPR000340 GO:0008138|GO:0016311
Vium419g00002 914 ProSiteProfiles Dual specificity protein phosphatase domain profile. 695 840 IPR020422 GO:0006470|GO:0008138
Vium419g00002 914 MobiDBLite consensus disorder prediction 1 25 - -
Vium419g00002 914 CDD DSP 696 833 - -
Vium419g00002 914 SMART dsp_5 695 837 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium419g00002 Vium-Chr419 5198 11515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium419g00002 6 906 Protein tyrosine phosphatase (PTP) family AT5G23720 62.156 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium419g00002 K14165 - gmx:100791993 1556.96