Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium419g00001 ATGGCAAAACAGCAAAACCAGGGAAAAGGCCAAGAGAGGGAATTGGAACTCGAAAGTGACGAGTCTGAGGCTGAGATTGAGGCCCCATTGCCTCTAACTGTGACCTCTCGGGCTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTGGTTCGTAAGCGCACTGCAAAACATCGTCCTTCTGGCTTCCCTCATCGCACTTCCATCACCATGTCGTCTACTTCTTGCGTTAGCGAACGGTTGGAGGATCCAAAATTGGAGTTACACCCGGATCAGACAGAAATTAGATTGTGGGAGAGGCTTGGGAAGGCTGCAATGTTGGACATTGAGTCGAGCTCTTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACGGTAGTAGCAATGAACAATCCGAAGATGAGATGAACAAAGCTCTCGAGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATCTGCCTGGGAATGCCGATATTTATCCAAAAGAAGCAGCAGCAGTTATAAAGATATCACCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTACGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGATGCAGTGTAGAGTCATTCACAATACCAGTCATGAATGGCAACAAATAAAGGAAGCTGCGGAAAGAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGCGAGGTGACATGTTTTGAACTTTTGGAAGCACTCGAGCTCAGCCGGTGTCTCTTTTTTATGAGTTATGTACACGGTTCACCCTTGCTTGAAAGCTCTACTGCATTCAAGTCAAAGGAATCTGCAGAAAGAACATCAGAAGCTCTTGGCAGGGTGCTGATGCTGGACCTTGTCATCAGAAATGAAGATAGGTTGCCTTGCCGTGAGCTTAGATGGCGTGGGAATCCAGCGAATTTGTTGTTGGCTGGAAAGACTATCTGTGCAAATACAGATGTGCTAGAAGCCGCTGTTGATTCTGCAATTGACCGATATAGACCAAAGATGATATGGGCTTTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCGATTCTCACGATCCTGGTTTGATATCACATTCCCCTGATCTTTCAGATATCTCAGAATCTCCAATATCTCTTGACATCAACCATATAAGTCAAACATCTGAAGAATCACTGTCTCCCGACATTAACATAATAGCCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTACCCTAAGTTGATTGAGTTGTTACTCAACAGTTCTGAATTTGCCTCAAACCTGATATATGATGTAACTGGAGGGAAATTAGGATGTCCTCCATCAGAAGACATGGACAAAACTGATATATATGCGAACGATATAATGTCTGTAGTTCATGCGTTCCGCGCTGGTTTCCGCGCTGCTCTCAGGGATCTGCAGGGATTTCACATATTCCTACTCACACTTCACCAAAGACTTGATACCTTGTTACGATCATTTATGAACATTATGAGCAAAATATCTTTGGGAGAATTTGACAAAGAAGATGCTGTAGTTCCTGACTCACCTTCACTAGCAGTTGGTGGGCATTTTTACTCGCCATCATGTAAAGAGAGGCTTGGTAATGATAACCATCATGATTTGATTGATTCAGAACCACAGAGAACTGCTTCAAAAGCATCACCTTCAGGCAACAGAGATTGCAGTGACTTTACTCCTACCCCAAGAGAATCTTGCCATGGAAAGTTCTATAGAGGAAATGGGGAACCACTGCGTAGTCTCCGTTTGACTACTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCCAGTAGAGAATTGGAACAATGGAATGAAATGCTTAAAAGCGATGCCATCAAACTATGTCAGGATAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACTGTGCTGTTGACGCATATGAACTTAAGATACGACTTGAGCATATTATCGAGAGAATTGCATTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATCGGTGGAGCATTGGCTGCAAGATCTGTTTACACACTGCAGTACTTGGGAATCACAAATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTATAAGAATTTCTCTGTATGTGATAGTGATGATTACAACATCAGCGGCATATTTGAAGAAGCATGTGATTTGATAGATCATGTTGAACAAACAGGTCAAAAAGTCTTAGTTCACTGCTTTGAGGGGAAAAGCCGAAGTGTTACATTGGTCCTCGCATACTTAATGCTCAGGAAGAAGTATACTTTATTAGAAGCATGGCAAGCTTTGAAGCGAGTTCACTGTCGAGCACAACCCAACGACGGTTTTGCAAAGACCCTATTGGACTTAGATCAGAAACTACATGGAAAGGTTTCGATGGAATGGCATCAGCGAAAACCAATGATGAAAGTTTGCCCAATATGTGGGAAGAATGCTGGGCTAAGCAGTAGTTCACTCAAGCTCCATCTGCAGAAATCACATAGAAAGCTGTCCTCTGGAAGTGTAGATAGCGCCATGACTATGGAAATCGAGAAAGCTTTGACAGCTTTGAAGATTAGCCGTGGAGGGAGTGTCAGCCCCACACAAAGATAA 2751 0.4315 MAKQQNQGKGQERELELESDESEAEIEAPLPLTVTSRALYMLGDITAGPAFKFTQWLQLVRKRTAKHRPSGFPHRTSITMSSTSCVSERLEDPKLELHPDQTEIRLWERLGKAAMLDIESSSFSWDMLSSLHHTEHGSSNEQSEDEMNKALEVTVNSGGVVFFAFFNLPGNADIYPKEAAAVIKISPSRMATQSERLGYEFAKWLGVQTPQMQCRVIHNTSHEWQQIKEAAERAREAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLESSTAFKSKESAERTSEALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLAGKTICANTDVLEAAVDSAIDRYRPKMIWAFQKERRSTSVDCRLDSHDPGLISHSPDLSDISESPISLDINHISQTSEESLSPDINIIAIDSGVPRRPPAGKRANDQVNYPKLIELLLNSSEFASNLIYDVTGGKLGCPPSEDMDKTDIYANDIMSVVHAFRAGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNIMSKISLGEFDKEDAVVPDSPSLAVGGHFYSPSCKERLGNDNHHDLIDSEPQRTASKASPSGNRDCSDFTPTPRESCHGKFYRGNGEPLRSLRLTTKLRDFHKFAKVDAESSRELEQWNEMLKSDAIKLCQDNNFNPGFFEGSDNNCAVDAYELKIRLEHIIERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYPDLFEYKNFSVCDSDDYNISGIFEEACDLIDHVEQTGQKVLVHCFEGKSRSVTLVLAYLMLRKKYTLLEAWQALKRVHCRAQPNDGFAKTLLDLDQKLHGKVSMEWHQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIEKALTALKISRGGSVSPTQR 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium419g00001 916 Gene3D - 272 377 IPR036940 -
Vium419g00001 916 FunFam Dual specificity protein phosphatase PHS1 669 843 - -
Vium419g00001 916 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 766 818 IPR000387 GO:0016311|GO:0016791
Vium419g00001 916 CDD DSP 698 835 - -
Vium419g00001 916 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 697 842 IPR029021 -
Vium419g00001 916 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 19 916 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vium419g00001 916 ProSiteProfiles Dual specificity protein phosphatase domain profile. 697 842 IPR020422 GO:0006470|GO:0008138
Vium419g00001 916 MobiDBLite consensus disorder prediction 573 591 - -
Vium419g00001 916 SMART dsp_5 697 839 IPR020422 GO:0006470|GO:0008138
Vium419g00001 916 Gene3D Protein tyrosine phosphatase superfamily 675 843 IPR029021 -
Vium419g00001 916 Pfam Dual specificity phosphatase, catalytic domain 718 838 IPR000340 GO:0008138|GO:0016311
Vium419g00001 916 Pfam Actin-fragmin kinase, catalytic 103 419 IPR015275 -
Vium419g00001 916 MobiDBLite consensus disorder prediction 1 25 - -
Vium419g00001 916 Coils Coil 221 241 - -
Vium419g00001 916 SUPERFAMILY Protein kinase-like (PK-like) 55 433 IPR011009 -
Vium419g00001 916 MobiDBLite consensus disorder prediction 561 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium419g00001 Vium-Chr419 5198 11515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium419g00001 6 908 Protein tyrosine phosphatase (PTP) family AT5G23720 62.020 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium419g00001 K14165 - gmx:100791993 1565.05