Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4193g00001 ATGGAGAAGAAGGAGATGGTTGTGAAGACTGAGGATGCGGTTGGGTCCTCTTCCTTCCCTTGTTATAATTCAAACGTTTATCCATTCTCGAACACCTTTGATTTCTCTGAGGTGGAAAAGAGCTCTTTAGGGTTTATGGAGCTACTGGGTGTGCAGGATTACAGTCCTCTGCTTGAGTTGCCTCAACTTTCAACCGTTTCTGTGCCTCATCACTCTACAGTTAAGGCTCCACCTGATAACGGAAAAGAGTGTTCCGAGGTGTTGAACCACCAACCCGCCACTCCGAACTCTTCTTCTATTTCATCTGCATCCAGTGATGCTGTCAATGATGAACAGAATAAGACTCTAGATCAAGTTGAAGAAGATGACGATGAAGAAGAAGAAGGACAACAAAAGACTAAGAAACAGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGGAAGTACGGTCAAAAGGCCGTGAAAAACAGCCCTTTTCCCAGGAGTTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGAACGATCTTTCACTGATCCAAGCGTGGTAGTCACAACCTACGAAGGCCAACACACACATCCAAGCCCAGTTATGCCTCGCTCAGGCGTCCCCGCTGGATACGCTACCAACTTTACTTCAGTTTTTCCACAAGCAGGAAACTACTTATCCCACTATCAGCAGCAGCACCAACATCAACAACTTATTTTCAACACATTGTCCTCTTTGGGTTTCCCTTACAATGATTCTTCCACTCCAAAGAACGCGGGTTTTACTCAAGAGAGACGGCTTTGTAATTCGGGGACGAATGCATTTCTAAGGGACCATGGACTTCTTCAAGATGTTGTTCCCTCACACATGTTGAAAGAAGAGTAG 954 0.4528 MEKKEMVVKTEDAVGSSSFPCYNSNVYPFSNTFDFSEVEKSSLGFMELLGVQDYSPLLELPQLSTVSVPHHSTVKAPPDNGKECSEVLNHQPATPNSSSISSASSDAVNDEQNKTLDQVEEDDDEEEEGQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSGVPAGYATNFTSVFPQAGNYLSHYQQQHQHQQLIFNTLSSLGFPYNDSSTPKNAGFTQERRLCNSGTNAFLRDHGLLQDVVPSHMLKEE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4193g00001 317 MobiDBLite consensus disorder prediction 87 112 - -
Vium4193g00001 317 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4193g00001 317 MobiDBLite consensus disorder prediction 69 152 - -
Vium4193g00001 317 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4193g00001 317 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4193g00001 317 PIRSF WRKY_txn_fact_IIc 1 317 IPR017396 GO:0003700
Vium4193g00001 317 Gene3D WRKY domain 148 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4193g00001 317 FunFam WRKY transcription factor 57 149 223 - -
Vium4193g00001 317 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 253 IPR044810 GO:0003700
Vium4193g00001 317 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4193g00001 Vium-Chr4193 42831 44997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4193g00001 34 317 WRKY Transcription Factor Family AT2G47260 46.939 3.49e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4193g00001 WRKY 2.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4193g00001 - - gmx:100784158 533.872