Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4187g00008 ATGGGCAAGGCTTGCGAGCTTTGCAATAACCAAGCTTCCCTCTATTGTCCTGCCGATTCCGCATTTCTCTGCGGCGACTGCGACACCGCCGTGCACGCCGCCAACTTCCTCGTCGCTCGCCACTTCCGTCGCCGTATCTGCGCCAAATGCAATCGTTCCACCGGAATCTACATCGCCGGCGCCACCTTTCCATCCATCTGCACCTCTTGCTCGCCGGAGAAGGCTCTTTCCGACGACGGCGATTCTCTCCCTTCGTCCTCCACCTGCGTCTCGAGTTCCGAGTCCTGCGCCACGAAGAAGATTAAGGCGACGCGCGGCGCGGCGGGGAAGAAAAGGAGGAGGAGTTTTTCGAGTTCGGTGACCGACGACGCGTCTCGGGAAGCGAAGAAGCAACGGGAGAAGGTCGGATCGGTGGAGCAGGAGGAGGTGTTCGCAAAATGGAGCAGAGAGATAGGTTTAGGGTTTGGAATAGGAGAGAACGGTAACCGCGTGGCGTCGCACGCTCTGAGCGTGTGCCTCGGAAAGTGGAATTTGCTTCCGTTCAGGGTGGCCGCGGCGACGTCGTTTTGGCTGGGCCTGAGATTTTGTGGGGACAGAAGTGTGGCCACGTGGCAGAATCTGGCGAGGTTGGAGAAAATCTCCGGAGTGCCAGCTAAGCTGATTCTGGCCGCACATGCAAACCTCGCACGTGTCTTGACGCTACCCCGCGATTTGCACGAGGGATGGGGCGAGTCATAG 738 0.5908 MGKACELCNNQASLYCPADSAFLCGDCDTAVHAANFLVARHFRRRICAKCNRSTGIYIAGATFPSICTSCSPEKALSDDGDSLPSSSTCVSSSESCATKKIKATRGAAGKKRRRSFSSSVTDDASREAKKQREKVGSVEQEEVFAKWSREIGLGFGIGENGNRVASHALSVCLGKWNLLPFRVAAATSFWLGLRFCGDRSVATWQNLARLEKISGVPAKLILAAHANLARVLTLPRDLHEGWGES 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4187g00008 245 SMART bboxneu5 1 46 IPR000315 GO:0008270
Vium4187g00008 245 Coils Coil 121 141 - -
Vium4187g00008 245 MobiDBLite consensus disorder prediction 103 134 - -
Vium4187g00008 245 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Vium4187g00008 245 MobiDBLite consensus disorder prediction 115 134 - -
Vium4187g00008 245 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 95 - -
Vium4187g00008 245 CDD Bbox1_BBX-like 4 46 - -
Vium4187g00008 245 Pfam B-box zinc finger 4 33 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4187g00008 Vium-Chr4187 83037 84861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4187g00008 1 245 C2C2-CO-like Transcription Factor Family AT3G21150 31.873 1.75e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4187g00008 zf-B_box 5.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4187g00008 - - pvu:PHAVU_008G254400g 394.43