Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4187g00006 ATGGATGGTATTCACGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGATTGCACCATATGAGCAATGGAAATGGGATTGACGAGGATCAGAATGATGGTGGTGATACTAATTGTGGTGGAAGTGAGAGTGTGGAAGGTGATATCCCCTCCAGCCATGGAAATCTCCCTGACAATCACGCTGTAATAATGGATCAAGGGGGTGATGCTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAAGTTTATGTCTTTGATTCCGTGTCACCAGAAAAGGTTCAAGCTGTTCTACTGTTATTGGGAGGCCGTGAAATACCTCCAACCATGCCTACCATGCCAGTGTCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCGTTGATTAGGTTTCGTGAAAAGCGAAAGGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGGATGCAAAGGAATAAAGGTCAGTTTACATCTTCAAAGTCCAATCACGATGAATCTGCATCAGCTGCAACAAGTTGGGGGCCAAATGAAAACTGGTCAGCAGAGAATAACGGATCCCAGCAGCAAGATATTGTTTGTAGGCATTGTGGCATCAGTGAAAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGCGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACCTATCAAGGGCGGCACCCATATCTGGACCAATAAAAAATGAGAATAAAAGTTTAGAGACCAACCAGATAGTAGTCCATAGAGTTGCCGGAGAAGCTGATGATTTATCGTGA 906 0.4514 MDGIHGGDSRIHISDGQHPIHVPYVQEHEHHGLHHMSNGNGIDEDQNDGGDTNCGGSESVEGDIPSSHGNLPDNHAVIMDQGGDAGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPTMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESASAATSWGPNENWSAENNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPISGPIKNENKSLETNQIVVHRVAGEADDLS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4187g00006 301 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Vium4187g00006 301 Pfam CCT motif 150 192 IPR010402 GO:0005515
Vium4187g00006 301 CDD ZnF_GATA 225 281 IPR000679 GO:0006355|GO:0043565
Vium4187g00006 301 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Vium4187g00006 301 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Vium4187g00006 301 MobiDBLite consensus disorder prediction 184 219 - -
Vium4187g00006 301 Gene3D - 216 283 IPR013088 GO:0006355|GO:0008270
Vium4187g00006 301 ProSiteProfiles GATA-type zinc finger domain profile. 220 279 IPR000679 GO:0006355|GO:0043565
Vium4187g00006 301 MobiDBLite consensus disorder prediction 32 74 - -
Vium4187g00006 301 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Vium4187g00006 301 MobiDBLite consensus disorder prediction 40 64 - -
Vium4187g00006 301 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Vium4187g00006 301 Pfam tify domain 87 116 IPR010399 -
Vium4187g00006 301 PANTHER GATA TRANSCRIPTION FACTOR 28 26 285 IPR045280 GO:0006355
Vium4187g00006 301 MobiDBLite consensus disorder prediction 183 219 - -
Vium4187g00006 301 SMART tify_2 82 117 IPR010399 -
Vium4187g00006 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4187g00006 Vium-Chr4187 46511 57940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4187g00006 1 296 Tify Gene Family AT1G51600 64.356 1.91e-137 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium4187g00006 CCT 8.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4187g00006 - - pvu:PHAVU_008G254600g 604.364