Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4187g00005 ATGGATGGTATTCACGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGATTGCACCATATGAGCAATGGAAATGGGATTGACGAGGATCAGAATGATGGTGGTGATACTAATTGTGGTGGAAGTGAGAGTGTGGAAGGTGATATCCCCTCCAGCCATGGAAATCTCCCTGACAATCACGCTGTAATAATGGATCAAGGGGGTGATGCTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAAGTTTATGTCTTTGATTCCGTGTCACCAGAAAAGGTTCAAGCTGTTCTACTGTTATTGGGAGGCCGTGAAATACCTCCAACCATGCCTACCATGCCAGTGTCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCGTTGATTAGGTTTCGTGAAAAGCGAAAGGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGGATGCAAAGGAATAAAGGTCAGTTTACATCTTCAAAGTCCAATCACGATGAATCTGCATCAGCTGCAACAAGTTGGGGGCCAAATGAAAACTGGTCAGCAGAGAATAACGGATCCCAGCAGCAAGATATTGTGTAA 678 0.4425 MDGIHGGDSRIHISDGQHPIHVPYVQEHEHHGLHHMSNGNGIDEDQNDGGDTNCGGSESVEGDIPSSHGNLPDNHAVIMDQGGDAGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPTMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESASAATSWGPNENWSAENNGSQQQDIV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4187g00005 225 MobiDBLite consensus disorder prediction 184 225 - -
Vium4187g00005 225 MobiDBLite consensus disorder prediction 40 64 - -
Vium4187g00005 225 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Vium4187g00005 225 Pfam tify domain 87 116 IPR010399 -
Vium4187g00005 225 PANTHER GATA TRANSCRIPTION FACTOR 28 26 220 IPR045280 GO:0006355
Vium4187g00005 225 SMART tify_2 82 117 IPR010399 -
Vium4187g00005 225 MobiDBLite consensus disorder prediction 32 74 - -
Vium4187g00005 225 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Vium4187g00005 225 MobiDBLite consensus disorder prediction 183 225 - -
Vium4187g00005 225 Pfam CCT motif 150 192 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4187g00005 Vium-Chr4187 46506 55831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4187g00005 1 224 Tify Gene Family AT1G51600 64.758 1.30e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium4187g00005 CCT 5.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4187g00005 - - pvu:PHAVU_008G254600g 461.455