Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4187g00002 ATGGGTGAAGAAGCCAAGACAATTGTTCCAGAGTCCGTTCTGAAGAAGCGTAAGAGGGAGGAGGAATGGGCTTTGGCAAAGAAGCAAGCTCTCGAAGCTGAGAAAAAAAAGAGAGCCGAGAGCCGCAAACTCATCTATAACAGAGCCCAACAGTACGCAAAGGAGTACGATCAGCAGGAGAAGGATTTGATTCGGTTGAAGCGTGAGGCAAAACTGAAAGGTGGATTTTATGTGGATCCAGAGGCGAAGCTCTTGTTTATCATTCGCATTCGTGGTATCAATGCAATGGACCCCAAGTCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGATCTTCAATGGTGTATTTCTCAAGGTTAACAAAGCCACCATGAACATGCTTCACAGAGTTGAACCTTATGTGACTTATGGATACCCAAATCTTAAGAGTGTGAAGGAACTTATTTACAAGAGAGGGTATGGAAAGCTCAACAAGCGAAGGACTGCTCTAACTGACAACGCCATCATTGAGCAGGCACTGGGCAAATATGGAATCATTTCAGCTGAGGATCTAATCCACGAGATCATAACAGTCGGACCTCACTTTAAGGAGGCTAACAACTTCCTGTGGCCATTTAAACTGAAGGCTCCTTTGGGTGGTTTGAAGAAGAAGAGAAACCACTATGTTGAGGGAGGAGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTAA 732 0.4467 MGEEAKTIVPESVLKKRKREEEWALAKKQALEAEKKKRAESRKLIYNRAQQYAKEYDQQEKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKRRTALTDNAIIEQALGKYGIISAEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4187g00002 243 PANTHER 60S RIBOSOMAL PROTEIN L7 7 243 IPR039699 -
Vium4187g00002 243 FunFam 60S ribosomal protein L7 189 243 - -
Vium4187g00002 243 NCBIfam 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vium4187g00002 243 FunFam 60S ribosomal protein L7 84 188 - -
Vium4187g00002 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Vium4187g00002 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Vium4187g00002 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Vium4187g00002 243 Coils Coil 49 69 - -
Vium4187g00002 243 Gene3D - 84 243 IPR036919 -
Vium4187g00002 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Vium4187g00002 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4187g00002 Vium-Chr4187 12583 14556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4187g00002 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.000 1.95e-155 429