Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4186g00012 ATGGACGAAGAAAACCAACGAAGTGTGCCGGTTCTGCCATGGATGCGCCACCCCGTCGACGTCACTCGCTGTGAACAACTCTCCCTTTGCAGAGTTCCTTTTCTGGACCGCAGATTAAAGTCGGCGCTAAAAAACATGGAAATCTCGAAGTTGTTCCCGGTTCAAGTTGCGCTATGGCAAGAAACTATTGGACCAGGTAACTTTGAGCGAGACCTTTGTATAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCTTATGCTCTTCCCATCGTGCAAAAGTTGTTGCCTACTTCCACTGTCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTCGATGCTATTGCATTGCCATTAGGCCTAAGTGTGGGGTTGGCTGTTGGTCAATCTTCGGTTGCTGATGAGATATCTAGTCTCGTTTACCTACCGGGGGAAGAGGAGGGTGTAGATCCTGGGTTTTTGTCTCCGTTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCAACTTGTCTAAGGGTTTCACATTGAAGCATCTTCATTATCTTGTGGTTGATGAAGCTGATCGGTTGCTCCGGGAGGACTACCAGTCCTGGTTGCCCACCGTACTTAAATCGACCCAATCTAGCAACAATGATTATGGTAATGATGATGTTTTCCAATTGGGGTTCCCTTATTCTCCCTGGAGTAGAAGAACATGTGGAGTTGAGAGGGGGTCTAACCCTCACTCTAGGCTGGCAAAGGTGGTTTTGTCTGCGACATTAACTCGAGATCCAGGACGGCTTGTTAAGCTTAATTTGCATCACCCTTTGTTCCTCAGTGCTGGCAAAATGCGGTATAGGCTCCCAGAAAATTTGGAATCATTCAAACTGATCTGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAATTTGATGAATTGTTTTAGAGATCTGCAAATTGACATCAAAGAGTATTCTGGTCGTCAACATCAACGTGTAAGAAGCAAGACACTGAATGAATTTAGAAAAGGGCATTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTAGAAGAGGTAAGAAATGTTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGGGCTGGCCAGACTGGGCGTTGCTTTACATTGATGTCAAATGATGAGGTTGGACGGTTTAAGAGGTTGATGAAAAAGGCTGAGGCTAGTGCTTGTCTTGAGCATACTGTTCCCTCCCATTTGATTGAAGAACTTCATAGTACCTACCAATCAGGTAAATATTTGAAATTCGACTTTTGGTGTGTAATGCACAAGCACCTTTCTCAACCATTGCCATGGGTGGATAGACTGCATTCATGTTTTAAAATACCGACAAAATATAAGAAACGTTTTAAAATTTCTAAGTGA 1560 0.4429 MDEENQRSVPVLPWMRHPVDVTRCEQLSLCRVPFLDRRLKSALKNMEISKLFPVQVALWQETIGPGNFERDLCINSPTGSGKTLAYALPIVQKLLPTSTVKCLRALVVVPTRDLALQVKQVFDAIALPLGLSVGLAVGQSSVADEISSLVYLPGEEEGVDPGFLSPFWFQSKVDILVATPGRLVDHVNLSKGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKSTQSSNNDYGNDDVFQLGFPYSPWSRRTCGVERGSNPHSRLAKVVLSATLTRDPGRLVKLNLHHPLFLSAGKMRYRLPENLESFKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCNLMNCFRDLQIDIKEYSGRQHQRVRSKTLNEFRKGHFQVLVSSDAMTRGMDVEEVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSNDEVGRFKRLMKKAEASACLEHTVPSHLIEELHSTYQSGKYLKFDFWCVMHKHLSQPLPWVDRLHSCFKIPTKYKKRFKISK 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4186g00012 519 Pfam Helicase conserved C-terminal domain 316 427 IPR001650 -
Vium4186g00012 519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 469 IPR001650 -
Vium4186g00012 519 PANTHER RNA HELICASE 35 451 - -
Vium4186g00012 519 Pfam DEAD/DEAH box helicase 59 277 IPR011545 GO:0003676|GO:0005524
Vium4186g00012 519 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Vium4186g00012 519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 291 IPR014001 -
Vium4186g00012 519 CDD SF2_C_DEAD 304 435 - -
Vium4186g00012 519 Gene3D - 303 468 IPR027417 -
Vium4186g00012 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 448 IPR027417 -
Vium4186g00012 519 CDD DEADc_DDX51 39 292 - -
Vium4186g00012 519 SMART ultradead3 47 307 IPR014001 -
Vium4186g00012 519 Gene3D - 15 294 IPR027417 -
Vium4186g00012 519 SMART helicmild6 346 427 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4186g00012 Vium-Chr4186 123525 130507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4186g00012 57 440 Eukaryotic Initiation Factors Gene Family AT3G13920 25.195 1.15e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4186g00012 K14807 - gmx:100789424 684.1