Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4186g00010 ATGGACGAAGAAAACCAACGAAGTGTGCCGGTTCTGCCATGGATGCGCCACCCCGTCGACGTCACTCGCTGTGAACAACTCTCCCTTTGCAGAGTTCCTTTTCTGGACCGCAGATTAAAGTCGGCGCTAAAAAACATGGAAATCTCGAAGTTGTTCCCGGTTCAAGTTGCGCTATGGCAAGAAACTATTGGACCAGGTAACTTTGAGCGAGACCTTTGTATAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCTTATGCTCTTCCCATCGTGCAAAAGTTGTTGCCTACTTCCACTGTCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTCGATGCTATTGCATTGCCATTAGGCCTAAGTGTGGGGTTGGCTGTTGGTCAATCTTCGGTTGCTGATGAGATATCTAGTCTCGTTTACCTACCGGGGGAAGAGGAGGGTGTAGATCCTGGGTTTTTGTCTCCGTTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCAACTTGTCTAAGGGTTTCACATTGAAGCATCTTCATTATCTTGTGGTTGATGAAGCTGATCGGTTGCTCCGGGAGGACTACCAGTCCTGGTTGCCCACCGTACTTAAATCGACCCAATCTAGCAACAATGATTATGGTAATGATGATGTTTTCCAATTGGGGTTCCCTTATTCTCCCTGGAGTAGAAGAACATGTAGTGGAGTTGAGAGGGGGTCTAACCCTCACTCTAGGCTGGCAAAGGTGGTTTTGTCTGCGACATTAACTCGAGATCCAGGACGGCTTGTTAAGCTTAATTTGCATCACCCTTTGTTCCTCAGTGCTGGCAAAATGCGGTATAGGCTCCCAGAAAATTTGGAATCATTCAAACTGATCTGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAATTTGATGAATTGTTTTAGAGATCTGCAAATTGACATCAAAGAGTATTCTGGTCGTCAACATCAACGTGTAAGAAGCAAGACACTGAATGAATTTAGAAAAGGGCATTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTAGAAGAGGTAAGAAATGTTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGGGCTGGCCAGACTGGGCGTTGCTTTACATTGATGTCAAATGATGAGGTTGGACGGTTTAAGAGGTTGATGAAAAAGGCTGAGGCTAGTGCTTGTCTTGAGCATACTGTTCCCTCCCATTTGATTGAAGAACTTCATAGTACCTACCAATCAGCACTATCAAAATTAAAGGAGATAATATTGGAGAGTCGCAGGAAGCCCAAGGATAAGTCCTGTCAATAG 1497 0.4509 MDEENQRSVPVLPWMRHPVDVTRCEQLSLCRVPFLDRRLKSALKNMEISKLFPVQVALWQETIGPGNFERDLCINSPTGSGKTLAYALPIVQKLLPTSTVKCLRALVVVPTRDLALQVKQVFDAIALPLGLSVGLAVGQSSVADEISSLVYLPGEEEGVDPGFLSPFWFQSKVDILVATPGRLVDHVNLSKGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKSTQSSNNDYGNDDVFQLGFPYSPWSRRTCSGVERGSNPHSRLAKVVLSATLTRDPGRLVKLNLHHPLFLSAGKMRYRLPENLESFKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCNLMNCFRDLQIDIKEYSGRQHQRVRSKTLNEFRKGHFQVLVSSDAMTRGMDVEEVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSNDEVGRFKRLMKKAEASACLEHTVPSHLIEELHSTYQSALSKLKEIILESRRKPKDKSCQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4186g00010 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 292 IPR014001 -
Vium4186g00010 498 SMART ultradead3 47 308 IPR014001 -
Vium4186g00010 498 CDD SF2_C_DEAD 305 436 - -
Vium4186g00010 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 449 IPR027417 -
Vium4186g00010 498 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Vium4186g00010 498 Pfam Helicase conserved C-terminal domain 317 428 IPR001650 -
Vium4186g00010 498 Gene3D - 15 295 IPR027417 -
Vium4186g00010 498 SMART helicmild6 347 428 IPR001650 -
Vium4186g00010 498 CDD DEADc_DDX51 39 293 - -
Vium4186g00010 498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 470 IPR001650 -
Vium4186g00010 498 Gene3D - 305 497 IPR027417 -
Vium4186g00010 498 Pfam DEAD/DEAH box helicase 59 278 IPR011545 GO:0003676|GO:0005524
Vium4186g00010 498 PANTHER RNA HELICASE 35 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4186g00010 Vium-Chr4186 123368 130502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4186g00010 57 441 Eukaryotic Initiation Factors Gene Family AT3G13920 25.130 1.68e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4186g00010 K14807 - gmx:100789424 709.138