Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4186g00007 ATGGAACACTCGGAGAGTAGCACCAGCAGCAACACTCAGAGAGAAAGTTTCCGTGTCGGAAGTTATGTACTGGGCCAGACTCTGGGCAAAGGAAACTTCTCCATCGTGAAGCTTGCACGTTGCCTTAAAACCGGAAACAATGTGGCCATCAAAATTTTCGATAAGCATGCGGTTCTCGCCAAGCAACCCCAGAACGAGTTGCTGAAGATGGAGCTAAACTTATTGAAAATGAAAATGATTAGACACCCTAATGTGGTGCATGTGCGTGAGGAGATACATTCAAAAACACAGTTCTTTATTGTAACGGAGCATGTAACTGGTGGGGAACTGTTTGATAAAATTACAAACACCGGGAGAATGGAAGAACCCGAAGCAAGAAAATATTTTCAGCAGCTTATACATGCTGTGGATTACTGTCACGGTAAAGGTGTTTCCCATAAAAACTTAAAGCCGGAGAATCTGTTGGTGGATGCTGATGGAGTACTTAAAATAATAGATTTTGGCGTAAATATGCTGTCCCAACAAGTTGGATCAGATGGATTGCTTCACACAGCACGTGGTCTGCCACATTATATCGCCCCAGAGGTAATGAACATCGGCTATGAGGATGCAAAGTCTGACATCTGGTCATGTGGTGTTATTCTTTTTTTTCTATTGGCTGGATATTTACCCTTCAAATGTAACGACACTACCATTTTATGCCTAGAGATGTTTAAGGCTGATTTCACATTTCCTTCATTTTTTTCTCCAAGTGTAAAGAGACTAATTGAGAGAATCCTTGATCCCAATCCAGCTAGACGGATTGCAATTAAAGATATCTTGGAGGATGAATGGTTCAAGAACGAGCCTCAATCCCAACAATTAAGTGCAAGTTTTCATGAAGATTCACAGGGTCCCGGAGAACCGGATTCACAGAACCCTGTAGAACCTGTTCCCAAGAATGCATTTCAGATAATGCGTGCCTATCTTGGCTTCAATCTTTTAGGAAATCTGCTTAACAAGGTACTTGGTAAAAGGGAAACAAGTTTCGTATCCAAATGCTCCCCAGATGAGATAATTTCAGGGATTGAACGAACTATAGCTTCTCTGGGTTTTAATGTTAAGGAGAGAAAGTACAAGTTGAAGATTAAATTGGAAAAGGATGAACATAAAGGTCATCTATCAATAGTTACTAAGATCTTTAAGGTGAATCCTTCCCTTTTCAAGGTTGAGGTTCGAAAGAATGGAAAAAATACCCCTGATTTTGAAGAGTTCTACAGGGATCTATGTGCTGGGCTGCGTGATATCATTTGGGAAGAGAAATCTGCCAACTCAAAAAGAGATGGTGCAAGACCAGGTATTGTGGATAAACATAGTCGTCTAGTAGTCCAGGTAAAAGCGAAGAAAAATCGGTTGTATGAACTGGAGCTAAAGATCTTGCAAAAACAGTGCTTGAAGCAAGATATGACTAGCAAAAGCTCGGATAATTCCATTGATGAGGTACATGTAGCACGTTTGTTAACAGGTGTAGAAGATGTAAAATTTGAAGAAGTTGTGCTTGATGAAAGATTGAGGAAAGCCATAAATGAGGAGATACAATGTCTAGGAAATCTAAATTGGATACTTCAAGAGCAAGTTCTTAGCAAGGAGAACCACCATTATAGTGAAGTAGCCACTAACAAATCGAATTTCAGAAACAATAATGTTAAAGTTGCTATAGACCCCGTAGTGACAACAAAGTTATTGGAAAGACAACCAGAACAAAAAACAAATAAGCAAATGTTAAAGACAAATTGGTCAAGTTCAAAAAGAGGATTACCACAATGA 1806 0.3959 MEHSESSTSSNTQRESFRVGSYVLGQTLGKGNFSIVKLARCLKTGNNVAIKIFDKHAVLAKQPQNELLKMELNLLKMKMIRHPNVVHVREEIHSKTQFFIVTEHVTGGELFDKITNTGRMEEPEARKYFQQLIHAVDYCHGKGVSHKNLKPENLLVDADGVLKIIDFGVNMLSQQVGSDGLLHTARGLPHYIAPEVMNIGYEDAKSDIWSCGVILFFLLAGYLPFKCNDTTILCLEMFKADFTFPSFFSPSVKRLIERILDPNPARRIAIKDILEDEWFKNEPQSQQLSASFHEDSQGPGEPDSQNPVEPVPKNAFQIMRAYLGFNLLGNLLNKVLGKRETSFVSKCSPDEIISGIERTIASLGFNVKERKYKLKIKLEKDEHKGHLSIVTKIFKVNPSLFKVEVRKNGKNTPDFEEFYRDLCAGLRDIIWEEKSANSKRDGARPGIVDKHSRLVVQVKAKKNRLYELELKILQKQCLKQDMTSKSSDNSIDEVHVARLLTGVEDVKFEEVVLDERLRKAINEEIQCLGNLNWILQEQVLSKENHHYSEVATNKSNFRNNNVKVAIDPVVTTKLLERQPEQKTNKQMLKTNWSSSKRGLPQ 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4186g00007 601 Pfam Protein kinase domain 22 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4186g00007 601 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vium4186g00007 601 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 414 - -
Vium4186g00007 601 Pfam NAF domain 314 368 IPR004041 GO:0007165
Vium4186g00007 601 MobiDBLite consensus disorder prediction 289 303 - -
Vium4186g00007 601 SUPERFAMILY Protein kinase-like (PK-like) 13 286 IPR011009 -
Vium4186g00007 601 Gene3D Kinase associated domain 1, KA1 312 432 - -
Vium4186g00007 601 CDD CIPK_C 338 428 - -
Vium4186g00007 601 MobiDBLite consensus disorder prediction 289 310 - -
Vium4186g00007 601 ProSiteProfiles Protein kinase domain profile. 22 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4186g00007 601 MobiDBLite consensus disorder prediction 584 601 - -
Vium4186g00007 601 MobiDBLite consensus disorder prediction 579 601 - -
Vium4186g00007 601 FunFam Maternal embryonic leucine zipper kinase 17 295 - -
Vium4186g00007 601 Gene3D Transferase(Phosphotransferase) domain 1 13 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4186g00007 Vium-Chr4186 101907 107457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4186g00007 18 436 CBL-interacting serine-threonine protein kinases AT1G01140 47.586 2.64e-131 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium4186g00007 Pkinase 1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4186g00007 - - vum:124837064 1186.02