Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4185g00010 ATGTTGCAGGATGTTATCCAACCCCCAACACCAGATGAGCAACAACTCCCCATTGATGAGATTTCAAGCCCAATCAGTGCTCGATATTTCGAACTTTGTGACCCTGATTTTTTCCAAGACACACTGCAAAATTCTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGACAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATGCAGTAGACAACAAGATCAATATCAATATCAATAGCAACATAGTCACCACCTCATCTAGTACTACCACAGCCAGCACCACTACCAACAACAACAACCTCAACAACAACAACAACACAACAAACAGCAATAACCTGTCTCTCTTCTTTGACTCTCCAGATGATCCTGACAATGACATATCAGCCTCCATAAACTTCTCACCATCTCCTTCTTTTGTTGTTCCACCACTTCTCCCAATCACAACTCAGCAGGATCACTTCGATTTCTCTTCAGCTCAGCAACAACTGCATCTATCTGCATCAGGTTCAGTTTTGAAGGGCCTCTCTCAGTACCCTACTGATCCTGTGGTTGCACCCCTTATTGGGGCTCCATTAGCCTCAGTTTTTGATGATGATTGCATCTCTTCCATCCCTTCTTATATGCCTCTCAACCCTTCATCTCCCTCTTGCTCTTATCTCAGTCCTGGCATAGCAGCCTACATGCCTCCTCCTGGTTCCCTTACCACTGCGTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTTGGGTCTGAACTGCAGGCACAAGAATTGGACTACCAGGGAGAAAATGGTGGAATATATTGTACAGATTCAATTCAGAGGGTGTTTAACCCCCCAGAACTTCAGGCACTTGGTAATGAGAGTCAGAAACTGGTATCTGCTGGGGGCTCTGGCACTTTGGCACCAGAAATTTCACACTTGGAGGACTCTACCTTGAAGGTTGGAAAACTTTCTGTCGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAACTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTGGCAGATAGCAGGCCACGGGTCAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGACAGCCATAGACAAGGAAGTAGCAACCATGAAGAAGATGATGAAGAGATAATTGTGAAAGAAGATGATGATTTGGTCGATTCCTCAGATATCTTTGCACATATCAGTGGGGTGAACTCTTTCAAATGCAACTATTCCATTCAGTCCTTGATTTGA 1278 0.4382 MLQDVIQPPTPDEQQLPIDEISSPISARYFELCDPDFFQDTLQNSEVTSSSNCCHEDKSSYATTISPPLDAVDNKINININSNIVTTSSSTTTASTTTNNNNLNNNNNTTNSNNLSLFFDSPDDPDNDISASINFSPSPSFVVPPLLPITTQQDHFDFSSAQQQLHLSASGSVLKGLSQYPTDPVVAPLIGAPLASVFDDDCISSIPSYMPLNPSSPSCSYLSPGIAAYMPPPGSLTTALSADSSGLFGGNILLGSELQAQELDYQGENGGIYCTDSIQRVFNPPELQALGNESQKLVSAGGSGTLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDSHRQGSSNHEEDDEEIIVKEDDDLVDSSDIFAHISGVNSFKCNYSIQSLI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4185g00010 425 MobiDBLite consensus disorder prediction 88 109 - -
Vium4185g00010 425 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 116 383 IPR045281 GO:0009909
Vium4185g00010 425 MobiDBLite consensus disorder prediction 364 388 - -
Vium4185g00010 425 Pfam CCT motif 328 370 IPR010402 GO:0005515
Vium4185g00010 425 ProSiteProfiles CCT domain profile. 328 370 IPR010402 GO:0005515
Vium4185g00010 425 MobiDBLite consensus disorder prediction 364 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4185g00010 Vium-Chr4185 125997 130426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4185g00010 328 386 C2C2-CO-like Transcription Factor Family AT5G57660 46.875 1.28e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4185g00010 CCT 5.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4185g00010 - - gmx:100793417 648.662