Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4185g00009 ATGCAGTTGAGTCTGGGCTCACATGAACTCCAGAAACGAGCGTTTAGAGTTCAGAGGCTTACCGGTTTCAGTATCGGAAGTTGTTCGGTTCAGATTGAAGCTCACAACTCCGGAAATGCTCCTATGTTCACTANAAAATTTGATCTCTTGAAGGGGCAGTTGATTGATTCTGGCATTACATCTGCCGACATATTGAAGGGAGTTATTTCACTAATATTTGATAAGGCAGTGCTAGAACCAACATTTTGCCCAATGTATGCCCAGCTATGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGATGAGCCTGGTGGGAAGGAAATCACTTTTAAGAGAGTGCTCTTGAATATCTGCCAGGAGGCTTTTGAAGGTGCAGATAACCTGAGGGAAGAAGTGAGACAGATGACTGCTCCTGAGCAGGAGATGGAGCGAAGGGATAAGGACAGACTTGTCAAGATTCGAACCCTTGGAAACATTCGTTTAATTGGTGAGCTATTGAAGCAAAAAATGGTTCCCGAAAAGATTGTTCATCACATTGTTCAGGAGCTTTTAGGTCCGCCTGACAGCAAGGTATGTCCAGCTGAGGAAAATGTTGAAGCTATATGTCAATTTTTCAACACTATTGGTAAGCAGCTTGATGAAAGCCAAAAATCGAGGCGTATTAATGATATGTACTTCAGTCGTTTGAAAGAATTGAGCACCAATCCCCAACTTGTTCCACGGCTGCGGTTTATGGTTCGTGATGTTCTAGATTTGCGTTCTAATAACTGGATTCCTAGACGTGAAGAGGTGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCAGAGAAAAATCTTGGATTGCGTCCAGGTGCCACTGCAAGTATGAGAAATAGCCGTGTAACTTCTGGTGTTCAAGGAAATGTCAGTCAGGGAGGATTTCCAATTGCCCGACCTGGTACTGGTGGTATGATGCCTGGGATGCCGGGGACAAGGAGGATTTCTGGAATTGATAATGACAACTGGGAGGTTCCCAGGACAAGATCAATGCCGAGAGGAGACATGTCAGGCATGCAAGCTGGAGGGCGTGGTCAGTCTCCTTTCATATCTAAGACACCAACTGTTAGCTCAAAGTTACTACCTCAAGGTAGTGGTGGTACTATAAGTGGGAGAAGCAGTGCCCTGGTGCATGGAGGTGGTGGTGCTCCTTCTGCTCGTCCATCAAATGTTGGTTTGAGTACCGAGTCCACACCTCAAATGCCTTCACCTGTTAAAGCTGTTTCTGCCATACCCTCTGAGAAGCCACAAGCTTCAGCTCCAAAATTGAATGTTGACGAACTTCAGCGTAAAACTAGTTCTCTTCTGGAGGAATATTTCAGTGTCCGGCTTTTGGACGAGGCATTGCAGTGTGTGGAGGAACTAAAAGCTCCGGCTTATCATCCCGAAGTTGTGAAGGAAGCCATTTCCATTGGACTAGATAAAAGTCCGCCATGTGTTGAACCTGTTGGCAAACTTCTTGAGTATCTGTTCGTGAAGAAGATTCTTTCAGCCAGAGACATAGGAACTGGGTGCATGTTATTTGCTTCTCTGCTGGATGATATCGGCATAGACTTACCTAAAGCACCAAATAATTTTGGTGAGATAGTAGGGAAACTAGTTTTGGCTGGGGCTTTGGATTTTAAGGTGGTGAGAGACGTCCTGAAGAAGGTGGAGGATGACCGGTTCCAGAAAGCAATATTTTCTGCTGCATTGCAGGTAATTAGCTCTGCATCTGGGCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCCTGTCAGAGTCTGTTCAACTGA 1824 0.4501 MQLSLGSHELQKRAFRVQRLTGFSIGSCSVQIEAHNSGNAPMFTXKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADNLREEVRQMTAPEQEMERRDKDRLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKVCPAEENVEAICQFFNTIGKQLDESQKSRRINDMYFSRLKELSTNPQLVPRLRFMVRDVLDLRSNNWIPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNSRVTSGVQGNVSQGGFPIARPGTGGMMPGMPGTRRISGIDNDNWEVPRTRSMPRGDMSGMQAGGRGQSPFISKTPTVSSKLLPQGSGGTISGRSSALVHGGGGAPSARPSNVGLSTESTPQMPSPVKAVSAIPSEKPQASAPKLNVDELQRKTSSLLEEYFSVRLLDEALQCVEELKAPAYHPEVVKEAISIGLDKSPPCVEPVGKLLEYLFVKKILSARDIGTGCMLFASLLDDIGIDLPKAPNNFGEIVGKLVLAGALDFKVVRDVLKKVEDDRFQKAIFSAALQVISSASGQAVLDSQASDIEACQSLFN 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4185g00009 607 SUPERFAMILY ARM repeat 46 260 IPR016024 -
Vium4185g00009 607 SMART ma3_7 443 555 IPR003891 -
Vium4185g00009 607 MobiDBLite consensus disorder prediction 403 419 - -
Vium4185g00009 607 FunFam Eukaryotic translation initiation factor isoform 4G-2 436 597 - -
Vium4185g00009 607 FunFam Eukaryotic translation initiation factor isoform 4G-2 40 259 - -
Vium4185g00009 607 MobiDBLite consensus disorder prediction 299 421 - -
Vium4185g00009 607 Gene3D - 42 271 - -
Vium4185g00009 607 MobiDBLite consensus disorder prediction 359 387 - -
Vium4185g00009 607 Pfam MA3 domain 443 555 IPR003891 -
Vium4185g00009 607 ProSiteProfiles MI domain profile. 442 564 IPR003891 -
Vium4185g00009 607 Pfam MIF4G domain 46 258 IPR003890 GO:0003723|GO:0005515
Vium4185g00009 607 SMART if4_15 33 258 IPR003890 GO:0003723|GO:0005515
Vium4185g00009 607 Gene3D - 435 602 - -
Vium4185g00009 607 SUPERFAMILY ARM repeat 436 594 IPR016024 -
Vium4185g00009 607 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 46 591 IPR045208 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4185g00009 Vium-Chr4185 113593 121007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4185g00009 46 605 Eukaryotic Initiation Factors Gene Family AT5G57870 67.080 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4185g00009 K03260 - gmx:100781275 985.711