Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium417g00001 ATGTGCATATATTCTTCCTTTAAGGTTCTCTTGTTGCTGCTTCTGCACGACGTGAAAGTGAAGAACATGAAGAATTCTAAGAAAACGGGTGTACGGAAATACCAAAAATCAGAAAATCCACGTCTGCGATGGACACCTGAACTCCATGAATACTTTGTAGAAGTTGTGGAAGGTCTTGGTGGAAAAAACAAGGCAACTCCAAAGAGCATTCTGCAGATGATGCATGTGAAAGGACTAAGAATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGAACCTGAAGGGGCATACGATTCTCTCATCAATGCATCAGGAGATGGAAGGGAATGAAGATGGTAAAGATCTTCCAATGTGCTCCAATTGTTCATCCCAAAGGTAA 381 0.4121 MCIYSSFKVLLLLLLHDVKVKNMKNSKKTGVRKYQKSENPRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQMYRNLKGHTILSSMHQEMEGNEDGKDLPMCSNCSSQR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium417g00001 126 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Vium417g00001 126 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 22 100 IPR046955 GO:0003700
Vium417g00001 126 FunFam Myb family transcription factor 38 96 - -
Vium417g00001 126 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Vium417g00001 126 Gene3D - 39 95 - -
Vium417g00001 126 MobiDBLite consensus disorder prediction 106 126 - -
Vium417g00001 126 NCBIfam myb-like DNA-binding domain, SHAQKYF class 39 93 IPR006447 GO:0003677
Vium417g00001 126 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 96 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium417g00001 Vium-Chr417 24625 27252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium417g00001 30 92 G2-like Transcription Factor Family AT1G14600 68.254 1.07e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium417g00001 Myb_DNA-binding 9.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium417g00001 - - vum:124839400 253.447