LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4166g00016	ATGCCATGGTCTTATGCTTCCCCCTATGTGCCTCCCCATCACAACTCTAACTACATTCCACCTTCCGATGATCCTGCTCACAACGGATTTTCCCGTGCTTCCGCTCCCCGTCCTGGAGCCTGGCAACGCGGCGGCAGCGCCGGCCGTGGTGCCTCCGATGGTCGTGGAATCTCTCGGCCCCGTGAGTCTTCTCACCGGAACTCACGTTTCCCCGTGGAGGAACAAGAAAATGGCGACGCTATTAACTTTGACGCGTACGAGTCTGTCCCGGTGGAGGCGAGTGGGAAGGACGTGCCTCCGCCGGTGAACGTCTTCGACGATACGGACTTGGACGAAGGGTTGAAGAGGAATATCAAGCGATGCAAGTACGTGAAACCCACGCCCGTTCAGCGTCACGCGATTCCCATAGCTACCGCGGGCCGTGACCTTATGGCGTGTGCACAGACTGGGTCGGGGAAGACGGCGGCGTTTTGCTTTCCCATCATATCTGGGATTTTGAAGGGTCGCTCCTCTTCTGCGTTTTCGCCTGTATCTCGTGGTGTCGCTGTTGCGTACCCCACTGCGCTTATTTTGTCTCCTACGAGGGAGTTATCTTGCCAGATACGCGATGAAGCGAACAAATTTGCATTTCAAACTGGAGTGAAGGTTGTTGTTGCCTATGGTGGATCTCCTATCATTCAGCAGCTGCGCCTTTTGGAGAAGGGGGTTGACATATTAGTTGCCACTCCTGGGCGTTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGGCGAGGATTAAGTACCTTGCATTAGACGAAGCTGATCGTATGCTGGACATGGGTTTCGAGCATCAAATACGCAAGATTGTGGAGAAAATGCACATGCCACCGCCAGGTATCAGACAGACATTGTTGTTTAGTGCAACGTTCCCTAATGATATACAGAAGCTAGCTTCGGACTTTTTGTCGGACTACATATTCTTGTCTGTTGGGAGAGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATACAGACAAAAGAGACAAACTTGTTAATCATCTTCGTAACCAAAAGGTGCATGGGACCAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTAGAAAGCTGGTTATCGAAAAGTGGCTTTCCAGCTATTGCCATACACGGAGACAAAGTTCAATTGGAAAGGGAACGGGCTTTAAGATCTTTTAAATCTGGACATACTCCTATTTTGGTTGCAACCGATGTTGCTTCGAGGGGATTGGATATCCCGCATGTGGCTCATGTCATAAACTTTGACTTGCCTAGAGACATAGATGACTATGTACACAGAATTGGACGAACAGGCCGTGCAGGCAAATCTGGTTTAGCCACTGCTTTCTTCAGTGACAAGAACAGTCCAATGGCAAAGGCTCTTGTTGGACTCTTGCAGGAGGCAAACCAAGAAGTTCCTTCTTGGCTCAACCAGTTTGCAGAGTGTTCCTCCTCAGGTGGCCGTGGTCGTGGTTATGGATCACAGCGTTATAGCAGTGGTAGCTATGGCGGTCGTGATTTTCGAAATCCCACTGAACCTGAGGTGCAAAGCTACAACTGCTACGGTTCTCATGGCAATGCAGATAATGCGGTAGAATCTTTTAGTACAACTTCATACGTTGATACCTCGTACGACATGCAAAACTACCCTGTAGAAACATCTTTTGACAATTTGAATATAAGTTGCAGTTATGAAGAAGGAGATGTTAACTCTATTGAACTGTGTGGAGGTGTAACGGTTGGTGAAGAGGGGCCTAGTGGTTATGCATCTATTGTTCCCACTGGGTGGGACTAG	1854	0.486	MPWSYASPYVPPHHNSNYIPPSDDPAHNGFSRASAPRPGAWQRGGSAGRGASDGRGISRPRESSHRNSRFPVEEQENGDAINFDAYESVPVEASGKDVPPPVNVFDDTDLDEGLKRNIKRCKYVKPTPVQRHAIPIATAGRDLMACAQTGSGKTAAFCFPIISGILKGRSSSAFSPVSRGVAVAYPTALILSPTRELSCQIRDEANKFAFQTGVKVVVAYGGSPIIQQLRLLEKGVDILVATPGRLVDIIERERVSLARIKYLALDEADRMLDMGFEHQIRKIVEKMHMPPPGIRQTLLFSATFPNDIQKLASDFLSDYIFLSVGRVGSSTELIVQKIELVQDTDKRDKLVNHLRNQKVHGTNGKHALTLVFVETKRGADALESWLSKSGFPAIAIHGDKVQLERERALRSFKSGHTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPMAKALVGLLQEANQEVPSWLNQFAECSSSGGRGRGYGSQRYSSGSYGGRDFRNPTEPEVQSYNCYGSHGNADNAVESFSTTSYVDTSYDMQNYPVETSFDNLNISCSYEEGDVNSIELCGGVTVGEEGPSGYASIVPTGWD	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4166g00016	617	CDD	SF2_C_DEAD	334	470	-	-
	Vium4166g00016	617	MobiDBLite	consensus disorder prediction	1	79	-	-
	Vium4166g00016	617	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	75	500	-	-
	Vium4166g00016	617	Gene3D	-	58	324	IPR027417	-
	Vium4166g00016	617	SMART	helicmild6	380	461	IPR001650	-
	Vium4166g00016	617	Gene3D	-	325	503	IPR027417	-
	Vium4166g00016	617	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	103	131	IPR014014	GO:0003724
	Vium4166g00016	617	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	134	322	IPR014001	-
	Vium4166g00016	617	SMART	ultradead3	122	337	IPR014001	-
	Vium4166g00016	617	Pfam	Helicase conserved C-terminal domain	363	461	IPR001650	-
	Vium4166g00016	617	FunFam	ATP-dependent RNA helicase RhlB	325	504	-	-
	Vium4166g00016	617	CDD	DEADc_DDX3_DDX4	105	328	IPR044763	GO:0003724\|GO:0005524
	Vium4166g00016	617	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	479	IPR027417	-
	Vium4166g00016	617	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	346	500	IPR001650	-
	Vium4166g00016	617	MobiDBLite	consensus disorder prediction	55	73	-	-
	Vium4166g00016	617	Pfam	DEAD/DEAH box helicase	127	311	IPR011545	GO:0003676\|GO:0005524
	Vium4166g00016	617	FunFam	Probable ATP-dependent RNA helicase DDX4	66	324	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4166g00016	Vium-Chr4166	78932	81965	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4166g00016	101	469	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.973	7.79e-58	198

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4166g00016	K11594		-	gmx:100791226	899.042