LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4166g00004	ATGGACGAAGATTCGCTCAAACGCAACACTGATTGCGTTTATTTTTTGGCCTCTCCCCTCACTTGCAAAAAGGGGGCTGAATGCGAGTATCGGCACAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGCCAATGCCTGAATCCAACGTGTGCTTTTAGACACCCTCCTCTGGATGGGCACACTGGAGTGCCAGCGCCATCTGAACCTGCACAGATTTCATTGCCTGCAAACAAGACAATGGTTCCGTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTCTTTTTTGCATGGGTCTGATGATAGCATTTTTACTGTAAAACCTGTGAAGAATGATGACGGAAGCACCGATGCACGCAATCTAGAAAATAAAACATCATCAGGAAATGGAACTGGTGTAGCGTCAGTGCCAACTCACCAATCTTTAACTGTTCCAAAGCATTTGTCTGATTTTAAGCGTCAGCCCAAGGAAAAGTTACAGTTATCCAAAAATGTTCAGCAGCAAGGCGATTCCCTAGTGATATCTGCTTCTGAATACAAAGAAGCTGCAGTAAGTAGGTCAGACTCTCCGTTTCCAGATGACGGCTTTGTACATAATGTATCTCATTTACGCACTGAGCGGAGTTCGGAAGAGCAAGTAAATAGTCAAATTGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGACGTTCTTGTGCACAATGAATTGGAGAACTTGGGTTACGAGGAAGATTCTGAATATTTACCAGTGCTTGATAGGAATGAGCAAGAGCTGAATGAGCAGTACTTGGGGTACGAATTTAAGGATCCAGTTGAGTATGATACTATGTGCCCGGAAGCTGATATTCTGTATCCACAAGAAACATATGATGGTTACAGATGTTTTGATAGTGACCTTACTCATGGTAATGGCAGAACAGTTCGTACTTATTCCAGAGATATATTCTTAGATTCTATATTCTCCAGGAAAAGGATTCGGATGTCAGCCGAGGTGGCTGCCTATGACAATAATTTAGATCTACGTGACCATCTCAGGAGACGTAGAGAAAATAATGGGCCTCCCATTGCAGGTTTCTTAAGAAGACAAGAATCGTCTTCTTTGATGATTCGAAACCAGGAAAGGCACCAGAGGCCTGGCATTGAGCAGCGGCCAAGTAGATTGACATCACAACTGGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATCGCTAACAAGCACAGGTTATTCAGGCGTTCCCAGCAACACAAACCAAGGAAGCATTATAGAGAAAAGCCAGCGAAACGACCATTTCTGTCATCTAAAATATCCAGGAAACCGGTTTTTAAACAAAGGGGATTTGTTGAGGAATCTACTGCATTTTCAGGACCTAAGACTCTTGCAGAAATTAGAGAAGAGAAGAAGAAGGCTGAAGAAGGTTTACATTGGAAACGCCCATCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTGAAGGACAAAAGGACCATGGATTAG	1557	0.4329	MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGQCLNPTCAFRHPPLDGHTGVPAPSEPAQISLPANKTMVPCYFFFNGFCNKGDKCSFLHGSDDSIFTVKPVKNDDGSTDARNLENKTSSGNGTGVASVPTHQSLTVPKHLSDFKRQPKEKLQLSKNVQQQGDSLVISASEYKEAAVSRSDSPFPDDGFVHNVSHLRTERSSEEQVNSQIEPEERWESSPHSPGFDVLVHNELENLGYEEDSEYLPVLDRNEQELNEQYLGYEFKDPVEYDTMCPEADILYPQETYDGYRCFDSDLTHGNGRTVRTYSRDIFLDSIFSRKRIRMSAEVAAYDNNLDLRDHLRRRRENNGPPIAGFLRRQESSSLMIRNQERHQRPGIEQRPSRLTSQLGYSAIDSIGEVETLSIANKHRLFRRSQQHKPRKHYREKPAKRPFLSSKISRKPVFKQRGFVEESTAFSGPKTLAEIREEKKKAEEGLHWKRPSTDFQDPKPLSEILKDKRTMD	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4166g00004	518	PANTHER	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	1	517	-	-
	Vium4166g00004	518	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	86	108	IPR000571	GO:0046872
	Vium4166g00004	518	SUPERFAMILY	CCCH zinc finger	83	108	IPR036855	GO:0046872
	Vium4166g00004	518	FunFam	Zinc finger CCCH domain-containing protein 17	1	63	-	-
	Vium4166g00004	518	ProSiteProfiles	Zinc finger C3H1-type profile.	37	63	IPR000571	GO:0046872
	Vium4166g00004	518	SMART	c3hfinal6	7	34	IPR000571	GO:0046872
	Vium4166g00004	518	SMART	c3hfinal6	83	109	IPR000571	GO:0046872
	Vium4166g00004	518	SMART	c3hfinal6	39	62	IPR000571	GO:0046872
	Vium4166g00004	518	MobiDBLite	consensus disorder prediction	130	150	-	-
	Vium4166g00004	518	Pfam	Zinc-finger containing family	7	63	IPR041686	-
	Vium4166g00004	518	MobiDBLite	consensus disorder prediction	214	239	-	-
	Vium4166g00004	518	Gene3D	-	71	121	-	-
	Vium4166g00004	518	MobiDBLite	consensus disorder prediction	214	237	-	-
	Vium4166g00004	518	MobiDBLite	consensus disorder prediction	483	518	-	-
	Vium4166g00004	518	ProSiteProfiles	Zinc finger C3H1-type profile.	83	110	IPR000571	GO:0046872
	Vium4166g00004	518	ProSiteProfiles	Zinc finger C3H1-type profile.	6	35	IPR000571	GO:0046872
	Vium4166g00004	518	MobiDBLite	consensus disorder prediction	119	150	-	-
	Vium4166g00004	518	Gene3D	-	2	63	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4166g00004	Vium-Chr4166	20528	23530	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Vium4166g00004		zf-CCCH_3	1.5e-11	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4166g00004	-		-	gmx:100792282	838.18