Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4166g00003 ATGGCTGCTCTCTTGAGAAGGTTTGCGAGAGCTACTCCGATACCGTTCGCTGCCCAATCCAACTCCTCTCACTCCAATCTCCGCCTTCCCTTCGCTGCTATCGCCGCCATTTCCGGCGGAGTCTCCTTCCTTTACTACCATTCCTCTCCCAGCTTCGTTCATTCGCAACAAACAGAACAAGAGGAAAGTAGAAATACCGCGCTCAACCCGGACAAATGGATCGAGTTTAAGTTGCAGGACACCGCCAGGGTTAGTCACAATACTCAGCTATTCAGGTTTTCGTTTGATCCCACTCAGAAATTGGGTCTGGATATTGCTTCTTGCATCCTTACAAGGGCTCCATTGGGACAAGATGCTGAAGGAAAACCAAAATTTGTTGTACGCCCGTATACTCCTATTTCAGATCCAGAATCGAAAGGATATTTTGACTTGCTAATCAAGGTGTATCCTGAAGGGAAGATGAGCCAGCATTTTGCAAGCTTGAAACCAGGTGATGTTGTTGAAGTGAAAGGGCCCAATGAAAAACTCAGATATACTCCTAATATGAAGAAGCATATTGGCATGATTGCTGGAGGCTCAGGAATTACTCCTATGCTTCAGGTAATTGAAGCTATTTTGAAGAATCCTGATGACAAAACTCAGGTATCATTACTTTATGCTAATGTCTCCCCAGATGACATTCTGCTTAAACAAAAGCTTGACATTCTAGCAACAAGCCACCCAAACTTAAAGATATTCTACACTGTTGATAATCCAACAAAAAATTGGAGAGGAGGTGCAGGTTACATATCAAAGGATATGGTTGTGAAAGGCTTACCTGCTCCTAGTGATGATACTCTTATACTGGTATGTGGACCTCCTGGGATGATGAAACAAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGGTTTCTGGCATCCTGAAAGAGGCTGGATACACTGAACAAATGGTTTACAAATTCTGA 972 0.4372 MAALLRRFARATPIPFAAQSNSSHSNLRLPFAAIAAISGGVSFLYYHSSPSFVHSQQTEQEESRNTALNPDKWIEFKLQDTARVSHNTQLFRFSFDPTQKLGLDIASCILTRAPLGQDAEGKPKFVVRPYTPISDPESKGYFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPNEKLRYTPNMKKHIGMIAGGSGITPMLQVIEAILKNPDDKTQVSLLYANVSPDDILLKQKLDILATSHPNLKIFYTVDNPTKNWRGGAGYISKDMVVKGLPAPSDDTLILVCGPPGMMKQISGEKAKDWTQGEVSGILKEAGYTEQMVYKF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4166g00003 323 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 71 179 IPR017927 GO:0016491
Vium4166g00003 323 FunFam NADH-cytochrome b5 reductase 170 323 - -
Vium4166g00003 323 PRINTS Cytochrome B5 reductase signature 280 288 - -
Vium4166g00003 323 PRINTS Cytochrome B5 reductase signature 187 206 - -
Vium4166g00003 323 PRINTS Cytochrome B5 reductase signature 225 236 - -
Vium4166g00003 323 PRINTS Cytochrome B5 reductase signature 128 135 - -
Vium4166g00003 323 PRINTS Cytochrome B5 reductase signature 164 178 - -
Vium4166g00003 323 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 187 206 IPR001709 GO:0016491
Vium4166g00003 323 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 225 236 IPR001709 GO:0016491
Vium4166g00003 323 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 128 135 IPR001709 GO:0016491
Vium4166g00003 323 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 280 288 IPR001709 GO:0016491
Vium4166g00003 323 FunFam NADH-cytochrome b5 reductase 66 169 - -
Vium4166g00003 323 Pfam Oxidoreductase NAD-binding domain 188 293 IPR001433 GO:0016491
Vium4166g00003 323 Pfam Oxidoreductase FAD-binding domain 76 178 IPR008333 -
Vium4166g00003 323 CDD cyt_b5_reduct_like 76 323 - -
Vium4166g00003 323 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 165 321 IPR039261 -
Vium4166g00003 323 Gene3D Translation factors 65 168 - -
Vium4166g00003 323 Gene3D - 169 323 IPR039261 -
Vium4166g00003 323 SUPERFAMILY Riboflavin synthase domain-like 64 181 IPR017938 -
Vium4166g00003 323 PANTHER NADH-CYTOCHROME B5 REDUCTASE 52 323 IPR001834 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4166g00003 Vium-Chr4166 11585 17061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4166g00003 62 323 NADPH P450 reductases AT5G17770 42.803 1.94e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4166g00003 K00326 - gmx:100781191 607.831