Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4161g00010 ATGGAGGAACTCATCATCTCCCCTTCCTCATCCTCCTCTTTGGTCACTCTACCCCATCAAAACCCAACACCATCTATTCAACAAAACCTCCAATTTCTCCTTCAAACCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGTAACCTTTTCCTCTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACTTCTCCAAAATTCTCAACCCCCGTTTCCACCAAGAAGTTCCCCAAAACCCCCAGAACAGAAAACATCAACGATGCCGAGTGGTTCTACGTCATGTCGTTGACTCGAACGTTTCCCGTCAACAATTCTTCTTCTTCGACCTCTACCACTCCTTCCTCACTCCTTGGCAAATCTTTTGCTCTGGGCTCTGTGCTGTGGCTCAATAGCAAACACGAGCTCCAATTCTACAAGTGCGAGAGATCAAACGAGGCACAGTTGCACGGGATCCAAACTTTGATCTCCATCCCCACACAAAACGGCGTCATCGAAATGGGATCCTACGACAGCATCAAACAAAACTGGAACCTCGTCCATCACGTCAAGTCTCTCTTCCAACCCCTCCCAGATCCGCTTCCCGTTCAACTCCTCAACGACCACACCATCTCCTTCGCTGACATCGGCGTCGTCGCCGGAATCCAAGAAACCAAAAAGCGAAAACAAACCCAAACACCACCCAAAAGCCAAAAGGACAGCTACGTAGACTCCGAACACTCTGATTCGGATTGTCCAACGCTGCCAACCACCTCCACCCCGACAGCCTCGGAGCCCAAAAAACGTGGCAGAAAACCTGTTCTCGGCCGCGAGACACCAATGAACCACGTGGAGGCTGAGCGGCAACGGAGGGAGAAGCTGAACCATCGCTTCTACGCGCTACGCGCTGTGGTTCCGAATGTTTCGAGGATGGACAAGGCTTCGTTGTTGTCCGATGCTGTCGCTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAAAGAGAGGGTAATAAAAGAGTGAAGACAGAAATGATGGATACCATGGATAATCAGAGCACCGCCACTACGTCCACCATCGTAGACCAAGGGAGACCTGGTCCTGGAGGCCCATGCCCATTGGGTCTCGAGATCGATGTGAAGATCGTGGGGCCTGATGCCATGGTGAGGGTGCAATCCGAAAATGCGAACCACCCCGGGGCGAGGCTAATGGGTGCACTGAGAGACCTAGAGTTCCAGGTTCATCACGCTAGCATGTCGTGCGTCAACGATCTCATGCTTCAGGACGTGGTGATCAATGTCCCTGATGGAATGAGGAGCGAAGAGAGTCTTAAATCTGCCATTCTCATGAGGTTGGATCAGTGA 1383 0.5134 MEELIISPSSSSSLVTLPHQNPTPSIQQNLQFLLQTQPDWWVYAIFWQASHDDNGNLFLSFGEGHFQGTKETSPKFSTPVSTKKFPKTPRTENINDAEWFYVMSLTRTFPVNNSSSSTSTTPSSLLGKSFALGSVLWLNSKHELQFYKCERSNEAQLHGIQTLISIPTQNGVIEMGSYDSIKQNWNLVHHVKSLFQPLPDPLPVQLLNDHTISFADIGVVAGIQETKKRKQTQTPPKSQKDSYVDSEHSDSDCPTLPTTSTPTASEPKKRGRKPVLGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESQQQREGNKRVKTEMMDTMDNQSTATTSTIVDQGRPGPGGPCPLGLEIDVKIVGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPDGMRSEESLKSAILMRLDQ 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4161g00010 460 SMART finulus 285 334 IPR011598 GO:0046983
Vium4161g00010 460 MobiDBLite consensus disorder prediction 1 20 - -
Vium4161g00010 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Vium4161g00010 460 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 195 IPR025610 -
Vium4161g00010 460 MobiDBLite consensus disorder prediction 249 265 - -
Vium4161g00010 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 341 IPR036638 GO:0046983
Vium4161g00010 460 Gene3D - 277 344 IPR036638 GO:0046983
Vium4161g00010 460 MobiDBLite consensus disorder prediction 266 291 - -
Vium4161g00010 460 CDD bHLH_AtAIB_like 277 353 - -
Vium4161g00010 460 Pfam Helix-loop-helix DNA-binding domain 283 328 IPR011598 GO:0046983
Vium4161g00010 460 MobiDBLite consensus disorder prediction 230 248 - -
Vium4161g00010 460 Coils Coil 325 345 - -
Vium4161g00010 460 PANTHER MYC 20 457 IPR045084 GO:0003700|GO:0006355
Vium4161g00010 460 MobiDBLite consensus disorder prediction 226 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4161g00010 Vium-Chr4161 216968 218887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4161g00010 22 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.556 2.54e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4161g00010 bHLH-MYC_N 6.6e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4161g00010 - K13422 var:108347008 833.558