Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4161g00009 ATGGGTCAGTGCTACGGCAAGTCCAATCTCACGCCGGAAAATGAGGCTACAGCCGCAGAGGGAGCAACAGTTGGCACCGCTATCGCGGTGGCTGGATCCGCTGACGTCCCGCTCTCTCCGCTGCCGGTGAAGGGAACGCCGGCGCGGGCGAGTCCCTGGCCCAGTCCATACCCACACGGTGGCGGTGTGACGCCGTCCCCGGCCAGAGGCACGCCGAGGAGATTTTTCCGGCGGTCGTTCGCGCCGCCGTCTCCTGCGAAGCACATAAGGGCGTCGCTGGCAAAGCGGCTCGGGCACGCGAAGACACCGAAAGAGGGGCCGATCCCGGAAGAAGAAGCGGCGGGAGCGGTGACGACGGAACAGTCGCTGGATAAGAGCTTTGGGTATGGTAAGAATTTTGGGGCGAAATATGAAATTGGGAAAGAAGTGGGTCGTGGGCATTTTGGTCATACTTGTTATGCTAAGGGGAAGAAGGGCGAACTCAAAGACCAGCCTGTTGCTGTTAAGATCATTTCCAAGGCGAAGATGACAACTGCAATAGCAATTGAGGATGTTCGCAGAGAGGTGAAGATATTAAAAGCTCTATCTGGCCATCAACATCTTGTCAAATATCATGATGCTTTTGAAGATGCCAACAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATTCAGAGGAGGATGCCAAGGTTATAGTTTTGCAGATTCTAAGTGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTGCACCGTGACCTTAAACCTGAGAATTTCCTCTTCACTTCGAGAAGTGAAGATGCTGACATGAAGCTTATTGATTTTGGTCTATCTGACTTCATCCGTCCAGATGAACGGCTGAATGACATTGTTGGGAGTGCTTATTATGTTGCACCTGAGGTCCTTCACCGGTCATATAGTCTGGAAGCCGATATATGGAGTATTGGTGTTATTGCCTATATCTTATTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTGCTTAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCTACTGCCTCTGCAGAAGCCAAGGATTTCGTGAAACGGCTTCTAAACAAGGACTACAGGAAAAGAATGACAGCTGTCCAAGCTCTAAGTCATCCTTGGTTGAGGGATGACAGCCGACCACTCCCTTTAGATATATTAGTTTATAAACTAGTGAAGGCTTATGTTCTTGCAACACCACTCAAACGGGCAGCAGTGAAGGCACTTTCAAAAGCCTTGCCAGAGGATGAATTGCCCTACCTTATGGCACAATTCAGATTGTTGGGACCAAACAGAGACGGACTCATCTCCCTTGACAATTTCAAAATGGCTCTTGTACAGAATGCAACTGAAGCAATGAGGGAATCAAGGGTTGTTGAGATCATAAATGCGATGGAGCCACTTGCCTATAGAAATATGGACTTTGAAGAATTTTGTGCAGCTGCAATCAGCACATATCAATTGGAAGCACATGAAAGGTGGGAAGACATTGCCTCAGCTGCATTTGAACACTTTGAGGCAGAAGGCAACCGTCTGATATCTGTTGAAGAATTGGCCAGAGAGTTGAATCTTGGGCCTTCAGCTTATTCAACTCTGAAAGACTGGATAAGAAATAGTGATGGAAAGCTTAACTTACTTGGATATACAAAATTTTTGCATGGTGTGACTGTCCGTAGTTCAAACCCAAGACACAGGTAG 1770 0.4757 MGQCYGKSNLTPENEATAAEGATVGTAIAVAGSADVPLSPLPVKGTPARASPWPSPYPHGGGVTPSPARGTPRRFFRRSFAPPSPAKHIRASLAKRLGHAKTPKEGPIPEEEAAGAVTTEQSLDKSFGYGKNFGAKYEIGKEVGRGHFGHTCYAKGKKGELKDQPVAVKIISKAKMTTAIAIEDVRREVKILKALSGHQHLVKYHDAFEDANNVYIVMELCEGGELLDRILSRGGKYSEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPTASAEAKDFVKRLLNKDYRKRMTAVQALSHPWLRDDSRPLPLDILVYKLVKAYVLATPLKRAAVKALSKALPEDELPYLMAQFRLLGPNRDGLISLDNFKMALVQNATEAMRESRVVEIINAMEPLAYRNMDFEEFCAAAISTYQLEAHERWEDIASAAFEHFEAEGNRLISVEELARELNLGPSAYSTLKDWIRNSDGKLNLLGYTKFLHGVTVRSSNPRHR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4161g00009 589 Gene3D - 411 579 - -
Vium4161g00009 589 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Vium4161g00009 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Vium4161g00009 589 MobiDBLite consensus disorder prediction 41 119 - -
Vium4161g00009 589 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Vium4161g00009 589 CDD STKc_CAMK 136 398 - -
Vium4161g00009 589 PANTHER SERINE/THREONINE-PROTEIN KINASE 121 564 - -
Vium4161g00009 589 SMART serkin_6 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4161g00009 589 FunFam CDPK-related kinase 1 130 225 - -
Vium4161g00009 589 SUPERFAMILY EF-hand 426 578 IPR011992 -
Vium4161g00009 589 MobiDBLite consensus disorder prediction 47 61 - -
Vium4161g00009 589 FunFam CDPK-related kinase 1 435 507 - -
Vium4161g00009 589 ProSiteProfiles Protein kinase domain profile. 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4161g00009 589 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Vium4161g00009 589 Pfam Protein kinase domain 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4161g00009 589 FunFam Calcium-dependent protein kinase SK5 309 410 - -
Vium4161g00009 589 SUPERFAMILY Protein kinase-like (PK-like) 129 417 IPR011009 -
Vium4161g00009 589 Gene3D Transferase(Phosphotransferase) domain 1 227 410 - -
Vium4161g00009 589 FunFam CDPK-related kinase 3 129 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4161g00009 Vium-Chr4161 178578 185703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4161g00009 1 583 EF-hand Containing Proteins AT3G50530 57.978 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium4161g00009 Pkinase 1.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4161g00009 K13412 - gmx:100796256 1033.86