Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4161g00008 ATGGGCATGGGGGAGAAGAGTCCAAGGAGTTTCCAATTGCACCATCGTGATGGGAAGAAGCAAGAGTTCAGAGGGGTGCCAAAAGGGTGCATGGCAATTAAGGTTGGTCAAGGAGAAGAGCAACAGAGGTTCGTGGTTCCTGTCATGTACATCAACCATCCTCTCTTCATGCAGCTTCTCAAGGAGGCAGAGGAAGAATACGGTTTCGACCAGAAGGGAACCATAACCATCCCTTGCCACGTTGAGGAATTCAGAAACGTCCGGGGTCTGATTGATAGGGACAAGTCCCTTCACCACCACCATGTTGGTTGCTTTGGCTTCTGA 324 0.5031 MGMGEKSPRSFQLHHRDGKKQEFRGVPKGCMAIKVGQGEEQQRFVVPVMYINHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGLIDRDKSLHHHHVGCFGF 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4161g00008 107 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 19 86 IPR003676 GO:0009733
Vium4161g00008 107 MobiDBLite consensus disorder prediction 1 20 - -
Vium4161g00008 107 Pfam Auxin responsive protein 21 87 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4161g00008 Vium-Chr4161 168397 169639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4161g00008 26 98 Calmodulin-binding Proteins AT5G20810 48.649 5.09e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4161g00008 K14488 - gmx:111188139 201.06