Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4161g00007 ATGGAATATACTTATTCAGCAGAGGGTGCAGAGGCTGAAACTTACACCAGTAGCAGCACCACCCCATCAAGTGGCATCAGATCAAAGAAGAAAAGCAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATATTTGGAAACCATGTTTGAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGACCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTCGAGAGAGACTATGGTATACTACAATCCAATTACAACAGTTTAGCCTCACGTTTTGAAGCTCTCAAGAAGGAAAAACAAACATTACTGATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTGGAGGCAGGTCAGAGTCGGACACAAGTTGAAGCAGAAAACAGAATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAGCTCGAGGAAAAGCCAAGCCCATCCATAGAAAGATCAGAACATGCACACGGCGTTCTGTCTGATGATGATGCTAGCATAAAGGCGGAACACTTTGGCCTAGAAAATGAACATGGTCTCTTGAACTTTGCTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATTGGAGTGCTTTTGAATCCGATGGTCTCTTAGGCCAAACGACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 726 0.4435 MEYTYSAEGAEAETYTSSSTTPSSGIRSKKKSNNTRRFSDDQIKYLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQVEAENRMDSESENGGTMKCELEEKPSPSIERSEHAHGVLSDDDASIKAEHFGLENEHGLLNFAEHADDSLTSPEDWSAFESDGLLGQTTSDYQWWDFWS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4161g00007 241 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Vium4161g00007 241 Coils Coil 109 129 - -
Vium4161g00007 241 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Vium4161g00007 241 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Vium4161g00007 241 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Vium4161g00007 241 Pfam Homeobox associated leucine zipper 89 131 IPR003106 GO:0006355|GO:0043565
Vium4161g00007 241 Pfam Homeodomain 36 87 IPR001356 GO:0003677
Vium4161g00007 241 SMART HOX_1 32 93 IPR001356 GO:0003677
Vium4161g00007 241 Gene3D - 18 98 - -
Vium4161g00007 241 CDD homeodomain 36 90 IPR001356 GO:0003677
Vium4161g00007 241 MobiDBLite consensus disorder prediction 10 29 - -
Vium4161g00007 241 SUPERFAMILY Homeodomain-like 14 91 IPR009057 -
Vium4161g00007 241 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 172 IPR045224 GO:0003700
Vium4161g00007 241 FunFam Homeobox-leucine zipper protein ATHB-7 16 89 - -
Vium4161g00007 241 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4161g00007 Vium-Chr4161 95940 97175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4161g00007 19 241 Homeobox Transcription Factor Family AT2G46680 48.617 8.80e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4161g00007 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4161g00007 K09338 - gmx:100797862 377.096