Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4161g00005 ATGACAACGCACATTGATAACCTGTGGGTGTTGGCCTTGGCCTCCAAATGCACTCAAGAGAACATTGCATGGTCACTCTTGATCATGGTCTGTCTCTGGCTCACCATGACTTTCTTCTACTGGTCTCACCCTGGTGGTCCTGCTTGGGGTAAGTACTACTCCTTCCATTACTGGAAAAAGCCCACTTCAACCTCATCCAACAACCTTAACCTTTCCTCGGATACTGACAAAATCATTCCCGGTCCCAAAGGCTACCCTATTATCGGGAGCATCAACCTCATGATCTCCCTCGCCCACCACCGTATCTTTGCCGCAGCCAAGGCATGCAACGCCATCAGGCTCATGGCCTTCAGCCTCGGAGACACGCGTGCCATAGTCACGTGCCACCCGGATGTGGCTAAGGAGATTCTCACCAGCTCTGTCTTTGCTGATCGTCCAATCAAGGAATCTGCATACAGTCTCATGTTCAACCGTGCCATCGGTTTCGCACCATACGGTGTCTACTGGCGCACCCTCCGCCGCATAGCCGCCACACACCTCTTCTGTCCCAAGCAAATCAAGGCGTCCGAGCTCCAACGGGCAGAAATAGCCGCCCAAATGACCCGCTCCTTCTGGAACCGCCAAGGTGCCTTTCAGCTTCGCCAGGTTCTAAAAAAAGCTTCTCTTAACAACATGATGTGGTCTGTCTTTGGACAAAGATATAAGCTGGACGAGGCAAACTCAGAAATGGAGGAGCTTTCCCAGTTGGTGGAACAGGGGTACGATTTATTGGGTACCCTTAATTGGGGCGACCACCTCCCTTTTCTCAAAGACTTTGACCTCCAGAAAATCCGGTTCACTTGCTCAAAACTCGTCCCCAAAGTAAACCGGTTCGTTGGTTCAATTATCGCCGACCATCAAGCCGACATAACCCAAACCAACCGCGATTTCGTTCATGTTTTGCTCTCTCTCCAAGGTCCAGATAAATTGTCTCACTCCGACATGATTGCTGTCCTCTGGGAAATGATATTTAGAGGGACCGACACGGTGGCGGTTTTGATTGAGTGGATATTGGCGAGGATGGTGCTTCATCCCGAGGTGCAAAAGAGGGTGCAAGAGGAACTGGACGCGGTGGTTGGTGGTGGGTCACGTGCCTTGACGGAGGAGGACGTGGCCATGACCGTTTATCTTCCGGCGGTGGTGAAGGAGGTTCTGAGGCTGCATCCTCCAGGCCCGCTTCTCTCCTGGGCCCGCTTGGCCATAACTGATACCACCATTGATGGGCATCATGTGCCCGCAGGGACCACGGCTATGGTAAATATGTGGGCCATAGCACGGGACCCGGAAGTATGGGTGGACCCACTCGAATTTAAGCCGGAGAGGTTCGTGGGTTTGGAGAACGAGTTTTCTGTTTTCGGGTCGGATCTGAGACTTGCTCCATTCGGATCGGGTAGGAGGACTTGTCCGGGGAAGACTCTGGGTTTGAGCACCGTGACCTTCTGGGTGGCGAGTCTCTTGCACGAGTTTCAATGGGTACCGTCCGATGAAGGCAACGGTGTCGATCTAACTGAGGTGCTGAGGCTCTCTTGCGAAATGGCGAACCCCCTCACTGTTAAAGTCCGTCCTAGGCGTGGACTAAGCCCTTAA 1626 0.5295 MTTHIDNLWVLALASKCTQENIAWSLLIMVCLWLTMTFFYWSHPGGPAWGKYYSFHYWKKPTSTSSNNLNLSSDTDKIIPGPKGYPIIGSINLMISLAHHRIFAAAKACNAIRLMAFSLGDTRAIVTCHPDVAKEILTSSVFADRPIKESAYSLMFNRAIGFAPYGVYWRTLRRIAATHLFCPKQIKASELQRAEIAAQMTRSFWNRQGAFQLRQVLKKASLNNMMWSVFGQRYKLDEANSEMEELSQLVEQGYDLLGTLNWGDHLPFLKDFDLQKIRFTCSKLVPKVNRFVGSIIADHQADITQTNRDFVHVLLSLQGPDKLSHSDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPEVQKRVQEELDAVVGGGSRALTEEDVAMTVYLPAVVKEVLRLHPPGPLLSWARLAITDTTIDGHHVPAGTTAMVNMWAIARDPEVWVDPLEFKPERFVGLENEFSVFGSDLRLAPFGSGRRTCPGKTLGLSTVTFWVASLLHEFQWVPSDEGNGVDLTEVLRLSCEMANPLTVKVRPRRGLSP 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4161g00005 541 FunFam Cytochrome P450 78A5 71 536 - -
Vium4161g00005 541 PRINTS E-class P450 group I signature 220 238 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS E-class P450 group I signature 391 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS E-class P450 group I signature 481 504 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS E-class P450 group I signature 327 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS E-class P450 group I signature 433 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS E-class P450 group I signature 347 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS E-class P450 group I signature 471 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 Gene3D Cytochrome P450 68 537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 474 483 IPR017972 GO:0005506|GO:0016705
Vium4161g00005 541 PRINTS P450 superfamily signature 338 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS P450 superfamily signature 472 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PRINTS P450 superfamily signature 481 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 Coils Coil 236 256 - -
Vium4161g00005 541 CDD CYP78 110 529 - -
Vium4161g00005 541 SUPERFAMILY Cytochrome P450 79 536 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 Pfam Cytochrome P450 80 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00005 541 PANTHER CYTOCHROME P450 78A7-RELATED 1 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4161g00005 Vium-Chr4161 37730 40059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4161g00005 1 537 Cytochrome P450 AT2G46660 64.652 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4161g00005 K20619 - gmx:100798388 949.118