Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4161g00004 ATGGCTCGNTACGATTTATTGGGTACCCTTAATTGGGGCGACCACCTCCCTTTTCTCAAAGACTTTGACCTCCAGAAAATCCGGTTCACTTGCTCAAAACTCGTCCCCAAAGTAAACCGGTTCGTTGGTTCAATTATCGCCGACCATCAAGCCGACATAACCCAAACCAACCGCGATTTCGTTCATGTTTTGCTCTCTCTCCAAGGTCCAGATAAATTGTCTCACTCCGACATGATTGCTGTCCTCTGGGAAATGATATTTAGAGGGACCGACACGGTGGCGGTTTTGATTGAGTGGATATTGGCGAGGATGGTGCTTCATCCCGAGGTGCAAAAGAGGGTGCAAGAGGAACTGGACGCGGTGGTTGGTGGTGGGTCACGTGCCTTGACGGAGGAGGACGTGGCCATGACCGTTTATCTTCCGGCGGTGGTGAAGGAGGTTCTGAGGCTGCATCCTCCAGGCCCGCTTCTCTCCTGGGCCCGCTTGGCCATAACTGATACCACCATTGATGGGCATCATGTGCCCGCAGGGACCACGGCTATGGTAAATATGTGGGCCATAGCACGGGACCCGGAAGTATGGGTGGACCCACTCGAATTTAAGCCGGAGAGGTTCGTGGGTTTGGAGAACGAGTTTTCTGTTTTCGGGTCGGATCTGAGACTTGCTCCATTCGGATCGGGTAGGAGGACTTGTCCGGGGAAGACTCTGGGTTTGAGCACCGTGACCTTCTGGGTGGCGAGTCTCTTGCACGAGTTTCAATGGGTACCGTCCGATGAAGGCAACGGTGTCGATCTAACTGAGGTGCTGAGGCTCTCTTGCGAAATGGCGAACCCCCTCACTGTTAAAGTCCGTCCTAGGCGTGGACTAAGCCCTTAA 876 0.5354 MARYDLLGTLNWGDHLPFLKDFDLQKIRFTCSKLVPKVNRFVGSIIADHQADITQTNRDFVHVLLSLQGPDKLSHSDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPEVQKRVQEELDAVVGGGSRALTEEDVAMTVYLPAVVKEVLRLHPPGPLLSWARLAITDTTIDGHHVPAGTTAMVNMWAIARDPEVWVDPLEFKPERFVGLENEFSVFGSDLRLAPFGSGRRTCPGKTLGLSTVTFWVASLLHEFQWVPSDEGNGVDLTEVLRLSCEMANPLTVKVRPRRGLSP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4161g00004 291 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 224 233 IPR017972 GO:0005506|GO:0016705
Vium4161g00004 291 PRINTS E-class P450 group I signature 141 159 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS E-class P450 group I signature 231 254 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS E-class P450 group I signature 77 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS E-class P450 group I signature 183 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS E-class P450 group I signature 221 231 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS E-class P450 group I signature 97 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS P450 superfamily signature 142 153 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS P450 superfamily signature 231 242 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS P450 superfamily signature 88 105 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PRINTS P450 superfamily signature 222 231 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 PANTHER CYTOCHROME P450 78A7-RELATED 4 287 - -
Vium4161g00004 291 Pfam Cytochrome P450 11 261 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 SUPERFAMILY Cytochrome P450 5 286 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4161g00004 291 Gene3D Cytochrome P450 3 288 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4161g00004 Vium-Chr4161 17682 19612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4161g00004 4 290 Cytochrome P450 AT3G61880 74.483 8.85e-149 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4161g00004 K20619 - gmx:100798388 535.028