Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4158g00003 ATGAGTTTTGGGGGGTTTCTTGAGGTCAAACAAAGTGGTGGAGGGGGTAGGATCGTATCAGATATTCCTTACAGCAACGGTTCCAACCACAGCAACGATATAATGCCCTCTGGTGCAATCTCGCAGCCTCGTTTAGCCAGTCCTACGTTGGCCAAATCCATGTTTAACTCTCCTGGCCTTTCTCTTGCGCTTCAAAGTGATGTCGACGGACAAGGGGATATGAACAGATTAATGCCCGAGAATTTTGAGCAAAATGGGTTGAGAAGGAGCCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGATGGAGCTTCTGGTGATGATTTTGATGCCGCCGACAACCCACCAAGAAAAAAACGTTATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAAGCGCTTTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGGCTTGAACTCAGCAGAAGGCTGAATTTGGAAACGAGGCAAGTAAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACACAATTGGAACGGCACGAGAACTCGCTGCTAAGGCAAGAGAATGACAAGCTTAGAGCGGAGAACATGTCTATGAGGGAGGCTATGAGAAATCCTATGTGCTCAAACTGTGGTGGTCCTGCAATGATTGGTGAGATTTCACTTGAAGAACAGCATCTCAGGATCGAGAATGCTAGGTTGAAGGATGAATTAGACCGTGTTTGTGCACTCGCTGGCAAGTTTTTGGGTCGCCCCATTTCTTCTTTAACAAGCTCAATTGGGCCTCCATTGCCAAACTCAAGCTTGGAGCTTGGGGTTGGGAGCAATGGTTTTGGAGGTTTGAGCACTGTGCCTGCAACATTGCCTGATTTTGGGGTGGGGATATCAAGCCCCTTAGCTATGATGTCACCTTCAACTAGACCAACTGCAACATCAACTGTGGTGACTGCTGGGCTTGACAGGTCAGTGGAGAGGTCTATTGTTTTGGAACTTGCTTTGGCTGCAATGGATGAGCTGGTGAAGATGGCTCAGACCGGGGAGCCTCTTTGGATCAGGAGTTTGGAAGGGGGAAGAGAAATTCTCAACTATGAGGAGTACACAAGGACAATGACACCTTGCATTGGTTTGAGACCCAATGGTTTTGTCACCGAGGCCTCTAGACAAACTGGCATGGTCATCATAAACAGCTTGGCTCTTGTTGAAACATTAATGGACTCAAATCGATGGTCAGAGATGTTCCCTTGTATGATTGCTAGAACCTCAACCGCTGAAGTTATATCTAATGGAATAAATGGAACTAGGAATGGTGCCCTTCAGCTTATGCATGCTGAACTTCAAGTCCTTTCGCCCTTGGTTCCTGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGCTTGTGGGCAGTGGTGGATGTGTCCATAGACACCATCCGAGAAACTTCTGGTGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTAGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAGTTCACCAGCTGTACAGACCCTTGTTGAGCTCAGGCACGGGGTTTGGTGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCTTAGCCATTCTAATGTCCTCAGCAGTTCCCTCTAGAGAACATTCAGCAATAAGCTCAGGTGGAAGGAGGAGCATGCTGAAGCTAGCACAACGCATGACGAACAATTTCTGTGCTGGAGTTTGTGCCTCCACGGTGCACAAGTGGAACAAGCTGAACGCGGGGAACGTGGGAGAGGACGTGAGGGTGATGACAAGAAAGAGCGTGGACGACCCCGGCGAGCCGCCGGGTATTGTTCTCAGCGCGGCCACCTCAGTGTGGCTGCCGGTGTCGCCTCAACGACTTTTCGACTTCCTGCGCGACGAGCGGCTCCGGAGTGAGTGGGACATCCTCTCGAACGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTCAGAGCCAGTGCTATGAATGCGAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACCGACGCGTCGGGGTCGCTTGTGGTGTACGCGCCGGTGGACATTCCCGCAATGCACGTGGTGATGAACGGCGGCGACTCTGCCTACGTGGCGCTTCTCCCGTCGGGGTTCGCCATCGTCCCGGATGGATCCGCGGCTGGTGGAGAGCAACACGGGGGCGCGTCGCAAAAGAGGGCGGGTGGATGTCTTCTGACGGTGGCGTTCCAGATTCTCGTGAACAGCCTACCGACGGCGAAGCTGACGGTGGAGTCGGTGGAGACCGTGAACAACCTCATCTCGTGCACCGTGCAGAAGATAAAAGCAGCGCTTCACAGCGAGAGTTGA 2454 0.5134 MSFGGFLEVKQSGGGGRIVSDIPYSNGSNHSNDIMPSGAISQPRLASPTLAKSMFNSPGLSLALQSDVDGQGDMNRLMPENFEQNGLRRSREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSSIGPPLPNSSLELGVGSNGFGGLSTVPATLPDFGVGISSPLAMMSPSTRPTATSTVVTAGLDRSVERSIVLELALAAMDELVKMAQTGEPLWIRSLEGGREILNYEEYTRTMTPCIGLRPNGFVTEASRQTGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSAVPSREHSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGSAAGGEQHGGASQKRAGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHSES 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4158g00003 817 ProSiteProfiles START domain profile. 323 559 IPR002913 GO:0008289
Vium4158g00003 817 MobiDBLite consensus disorder prediction 85 101 - -
Vium4158g00003 817 CDD homeodomain 120 178 IPR001356 GO:0003677
Vium4158g00003 817 CDD START_ArGLABRA2_like 327 555 - -
Vium4158g00003 817 SUPERFAMILY Bet v1-like 584 810 - -
Vium4158g00003 817 Pfam Homeodomain 121 176 IPR001356 GO:0003677
Vium4158g00003 817 SMART HOX_1 119 182 IPR001356 GO:0003677
Vium4158g00003 817 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Vium4158g00003 817 FunFam Homeobox-leucine zipper protein HDG1 108 194 - -
Vium4158g00003 817 FunFam Homeobox-leucine zipper protein GLABRA 2 332 555 - -
Vium4158g00003 817 Coils Coil 172 207 - -
Vium4158g00003 817 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 117 814 IPR042160 -
Vium4158g00003 817 Gene3D - 108 194 - -
Vium4158g00003 817 SUPERFAMILY Homeodomain-like 104 178 IPR009057 -
Vium4158g00003 817 SMART START_1 332 556 IPR002913 GO:0008289
Vium4158g00003 817 MobiDBLite consensus disorder prediction 66 128 - -
Vium4158g00003 817 Pfam START domain 332 556 IPR002913 GO:0008289
Vium4158g00003 817 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Vium4158g00003 817 SUPERFAMILY Bet v1-like 326 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4158g00003 Vium-Chr4158 46195 52064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4158g00003 1 817 Homeobox Transcription Factor Family AT3G61150 65.362 0.0 1049
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4158g00003 START 5e-56 CL0209