LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4154g00035	ATGGCTTCAACTCTTCAAGCTTTTGCTTTTACAATGAAGTTCATGTTCATTCTGATGTTCATGCGAGAGCAAGCAACAGCTGCGGGGATATTTCGACCCAGTCAATGGGCTCTCGCCCACGCCACCTTTTACGGTGATGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGGTACGGGAATTTATTTCAAAATGGCTACGGGACAGACACGGCGGCTCTAAGTTCTACGTTGTTCAACAATGGTTATGCGTGTGGAACTTGTTATCAAATAAAGTGTTACCAATCAAGTGCGTGTTATAAGAACGTTGCCTTTACGACGGTGACCGCCACCAATCTTTGCCCTCCTAACTGGGCGCAACCCTCCGATAACGGCGGCTGGTGCAACCCACCACGAGTTCATTTTGACATGGCCAAACCCGCTTTCATGAAGATTGCGCAGTGGAAAGCCGGCATCGTCCCTGTTATGTACCGCAGAGTGGCATGTGTAAGGAAGGGAGGGGTTCGATTCTCTTTTCAAGGAAACGGATACTGGCTATTGGTGTATGTGATGAACGTGGGAGGTGGAGGAGATATTTCGAGCATGTCGGTGAGAGGAAGCAGAAGTGGATGGATCAGCATGAGCCATAACTGGGGTGCTTCATATCAAGCATTTGCAACTCTTGCTGGCCAAGCTCTTTCTTTCAGGATTACTTCATACACCACCAGAGAAACTATAATTGCATGGAATGTTGCTCCTTCAAACTGGAACGTCGGACTCACATATTCCACCACTGTTAACTTCCGCTGA	789	0.4829	MASTLQAFAFTMKFMFILMFMREQATAAGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVMYRRVACVRKGGVRFSFQGNGYWLLVYVMNVGGGGDISSMSVRGSRSGWISMSHNWGASYQAFATLAGQALSFRITSYTTRETIIAWNVAPSNWNVGLTYSTTVNFR	262

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4154g00035	262	Gene3D	-	22	162	IPR036908	-
	Vium4154g00035	262	PRINTS	Expansin signature	125	142	IPR002963	GO:0009664
	Vium4154g00035	262	PRINTS	Expansin signature	178	199	IPR002963	GO:0009664
	Vium4154g00035	262	PRINTS	Expansin signature	106	116	IPR002963	GO:0009664
	Vium4154g00035	262	PRINTS	Expansin signature	166	178	IPR002963	GO:0009664
	Vium4154g00035	262	PRINTS	Expansin signature	142	155	IPR002963	GO:0009664
	Vium4154g00035	262	PRINTS	Expansin signature	243	259	IPR002963	GO:0009664
	Vium4154g00035	262	PRINTS	Expansin signature	66	80	IPR002963	GO:0009664
	Vium4154g00035	262	SUPERFAMILY	Barwin-like endoglucanases	35	185	IPR036908	-
	Vium4154g00035	262	CDD	DPBB_EXPA_N	35	162	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4154g00035	Vium-Chr4154	149863	151138	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4154g00035	1	262	Expansin Gene Family	AT1G12560	65.399	4.29e-128	362

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4154g00035	-		-	gmx:100798322	498.819

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