Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4154g00021 ATGGAACTTGCATTGCCTCTTGCTCTTATTTTCGCGCTAATTAGTGTATGTCCAACAACTTCGGCACACCAAAATCCAGAATTCGCCAAAGCAATAGAGGAACATTATCTTCCAACTGAAGAAATCAATGTTCCAAACAGCTTGCTGACTTACATTGTTCGCGTTGAAAGGTCTGATGAGGGTGGTGATTCTCTTCGGTCTAAGTACTTGCTTGGTTGGTACCGTTCTCTCCTTCCATCCAGTTTGGAATCTGATCAGAACCCGCGGCGCATTATTTTCTTATACCGCAACGTGATGGATGGATTTGCAGTGGAATTGACCCCAGAAGAAGCCGAAGCTCTCGAAGAGAAGGAGGAGGTTGTGTCAGTGCGTCCTGAAAGGACCTATTCATTACACACAACTCATACTCCAACGTTCTTGGGGTTGCAACAGGGACTGGGATTATGGAGCAATTCTGATGTTGGTAAAGGCATCATAATTGGACTTCTGGACACGGGCATAACCCCTGATCACCCTTCTTTCTCTGATGAAGGAATGCCACTTCCACCGGCAAAATGGAATGGCCTCTGTGAATTCTCTGGACGGAGGACTTGCAACAACAAGCTCATTGGTGCAAGAAATTTTGTCAAGAACTCAAACTCATCCCTTCCGCTGGATAGTTTTGGACATGGGACCCACACAGCCAGCACAGCCGCAGGAAGGTTTGTGCAGGGTGCTAATCTCTTTGGCAATGCCAATGGTACGGCGGTTGGTATGGCACCTGATGCACACTTAGCAATGTACAAGGTATGTGACCTCGCTGGTTGTTTGGAAAGTGCAATACTTGCTGGAATGGACACTGCCATTGAGGATGGCGTGGATGTACTTTCTCTCTCCCTTGGAGGACCCTCTTTTCCTTTCTTTGACGATTCAATTGCACTTGGTGCATTCAGCGCAATTCAGAAGGGAATTTTCGTTAGTTGTTCGGCTGGTAACTCCGGTCCTTATTATGCCAGTTTATCTAATGAGGCTCCGTGGATTCTCACCGTTGGCGCAAGCACCATTGACAGAAGAATATTAGCAACAGCGAAACTTGGCACCGGGCAAGTGTTCAGCGGGGAATCTATTTTCCAACCCCACAACTTCACGTCAACGTTGCTACCACTTGTTTATGCAGGTGCAAATGGAAACTCCTCGTCGGCCTTCTGTGTTCCTGGATCCTTGGAAAACGTGGATGTGACGGGAAAGGTAGTGTTGTGCGAGGTTGGTGGATTCGTTAGAAGTGTAGACAAAGGACAAGAGGTTAAGAACGCCGGTGGAATAGCCATGATCCTCATGAACTCAGTAATTGGAGACTTCAATCCCTTTGCCGAGGTTCACGTTCTTCCTGCTACACACGTAAGCTACCGTGCTGGGTTAGCCATCAAAAGTTACATAAACTCAACTTCAACGCCAACAGCAACAATTTTGTTCGGAGGAACCGTTATTGGAAGCCTCTTTGCACCTGCAGTTACTTCCTTTTCCTCAAGGGGTCCGAGTTTTGCGAGCCCGGGAATTCTTAAGCCTGACATCATTGGTCCAGGACAGAACATTCTAGCTGCATGGCCCGTGTCTTTGGACAACAATGTGCCTTCGTTCAATATCATTTCTGGCACATCAATGTCTTGTCCTCATCTTGCTGGCATTGCTGCTTTGCTTAAAAATTCTCATCCAGATTGGTCTCCTGCTGCCATAAAATCAGCAATCATGACGACTGCTAATACAGTGAACCTTGGAGGGATGTCCATATTGGATCAAAGGCTTCTACCGGCTGATGTTTTTGCCACAGGAGCTGGACATGTTAACCCTTTGAAGGCCAACGATCCCGGGCTTGTTTATGATCTTCAACCAAATGATTACATTCCTTATTTGTGTGGCTTGAATTACACTGACAAAGAAATTGGACTGATTTTGAACCAAAATGTGGACTGCTCCGAGGTGAAAACCATACCGGAAGCTCAACTCAATTATCCCTCGTTTTCAATTCAGTTGGGATCAACTCCACAGTTCTACACTAGAACACTTACAAATGTTGGAGCCACCAATGTAACCTACTTTTCCGAAATGGACCCACCTTTGGGAGTAGGCATAAGCATAAGCCCTGCTAAGATAACATTCACAGAGGTGAAGCAGAAGGTTACATACACTGTTGGATTTATTCCTGGGGACGCAAAGAATAGAGGGAATCACACGTTTTCTCAAGGTTCTATCAGGTGGGTATCTGGTAAATACTCTGTTAGCATCCCTGTAGCTGCTGTTTTCCTATGA 2286 0.4606 MELALPLALIFALISVCPTTSAHQNPEFAKAIEEHYLPTEEINVPNSLLTYIVRVERSDEGGDSLRSKYLLGWYRSLLPSSLESDQNPRRIIFLYRNVMDGFAVELTPEEAEALEEKEEVVSVRPERTYSLHTTHTPTFLGLQQGLGLWSNSDVGKGIIIGLLDTGITPDHPSFSDEGMPLPPAKWNGLCEFSGRRTCNNKLIGARNFVKNSNSSLPLDSFGHGTHTASTAAGRFVQGANLFGNANGTAVGMAPDAHLAMYKVCDLAGCLESAILAGMDTAIEDGVDVLSLSLGGPSFPFFDDSIALGAFSAIQKGIFVSCSAGNSGPYYASLSNEAPWILTVGASTIDRRILATAKLGTGQVFSGESIFQPHNFTSTLLPLVYAGANGNSSSAFCVPGSLENVDVTGKVVLCEVGGFVRSVDKGQEVKNAGGIAMILMNSVIGDFNPFAEVHVLPATHVSYRAGLAIKSYINSTSTPTATILFGGTVIGSLFAPAVTSFSSRGPSFASPGILKPDIIGPGQNILAAWPVSLDNNVPSFNIISGTSMSCPHLAGIAALLKNSHPDWSPAAIKSAIMTTANTVNLGGMSILDQRLLPADVFATGAGHVNPLKANDPGLVYDLQPNDYIPYLCGLNYTDKEIGLILNQNVDCSEVKTIPEAQLNYPSFSIQLGSTPQFYTRTLTNVGATNVTYFSEMDPPLGVGISISPAKITFTEVKQKVTYTVGFIPGDAKNRGNHTFSQGSIRWVSGKYSVSIPVAAVFL 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4154g00021 761 SUPERFAMILY Subtilisin-like 131 617 IPR036852 GO:0004252|GO:0006508
Vium4154g00021 761 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 160 171 IPR023827 -
Vium4154g00021 761 Gene3D - 349 489 - -
Vium4154g00021 761 ProSiteProfiles Serine proteases, subtilase domain profile. 128 613 - -
Vium4154g00021 761 CDD PA_subtilisin_like 355 482 - -
Vium4154g00021 761 SUPERFAMILY PA domain 381 479 IPR046450 -
Vium4154g00021 761 FunFam subtilisin-like protease SBT1.5 349 489 - -
Vium4154g00021 761 Pfam Subtilase family 155 582 IPR000209 GO:0006508|GO:0008236
Vium4154g00021 761 Gene3D Peptidase S8/S53 domain 157 626 IPR036852 GO:0004252|GO:0006508
Vium4154g00021 761 Pfam Peptidase inhibitor I9 50 132 IPR010259 -
Vium4154g00021 761 Pfam Fibronectin type-III domain 660 757 IPR041469 -
Vium4154g00021 761 CDD Peptidases_S8_3 129 580 IPR034197 -
Vium4154g00021 761 Gene3D - 630 760 - -
Vium4154g00021 761 Pfam PA domain 381 468 IPR003137 -
Vium4154g00021 761 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 86 757 IPR045051 -
Vium4154g00021 761 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Vium4154g00021 761 PRINTS Subtilisin serine protease family (S8) signature 219 232 IPR015500 -
Vium4154g00021 761 PRINTS Subtilisin serine protease family (S8) signature 155 174 IPR015500 -
Vium4154g00021 761 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 40 132 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4154g00021 Vium-Chr4154 129114 131399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4154g00021 50 747 Subtilisin-like Serine Gene Family AT1G04110 45.319 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4154g00021 - - gmx:100799902 1191.02