Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4154g00020 ATGGAGAAAAGCAAGTATGTGATGGAGCTTGCGTTTCTTCTGGGTCTCATTTTCATGCTTGGCACCAATGCAAGTTCATCTGCCAAAGACCATGGGAACAACTTGCAAACTTACATTGTTCACGTGAAAAGGGTAGAAAGTAGACCTACTCTTGAATCAGAAGAGTTGCATAACTGGTACCACTCCTTCCTTCCAGAAACCTCCAAGAAGGATCGAATGGTTTTCTCTTACCGCAATGTGGCCTCTGGATTTGCCGTGAAGTTAACCCCAGAAGAAGCCAAGGCTCTTCTAGAGAAAGATGAGATTGTGTCAGCTCGTCCTGAAAGGACACTTTCTCTGCACACAACACACACTCCATCATTCTTGGGGCTGCCACAAGGAGGATTGTGGAATAGTTCCAACCTTGGCCAAGGCGTCATAATTGGAGTCATAGACACAGGTATATACCCTTTCCATCCATCTTTCAACGATGAAGGGATGCCACCTCCACCGTCCAAATGGAACGGACACTGTGAATTCACAGGGCAAAGAACCTGCAACAATAAACTAATTGGTGCAAGGAACTTGGTCAAAAGCGCTGCTGAAGAGCCTCCTTTTGAAAACTTCTTCCACGGAACTCACACTTCTGCGGAAGCTGCTGGAAGATTTGTAGAGAACGCCAGTGTTTTTGGCAACGCTCGGGGAACTGCGGCTGGCATGGCGCCTCATGCTCACTTAGCTATGTACAAAGTTTGCAATAATCAAGTAGGGTGCACTGAAAGTGCCATCTTAGCCGCAATGGACATAGCCATTGATGATGGTGTTGATGTTCTTTCTCTCTCCCTTGGATTAGGCTCTCTTCCGTTCTTTGAAGACCCTATTGCCATTGGTGCATTTGCGGCTATTCAGAACGGAGTTTTTGTTAGTTGCTCAGCCGCAAACGCTGGCCCTGACTATGCCACACTCTCCAACGAAGCCCCGTGGATCCTCACCGTTGGTGCAAGCACTATTGACAGAAAGATAGCAGCATCGGCAGTACTTGGAAATGGTGCAGAATATGCAGGGGAATCTTTGTTCCAACCCCAAGACTTTTCCCCTACACTGTTGCCACTTGTGTATCCTGGTGCAAATGGGAACCTCAGCACCGGCTTCTGTTTACCTGACTCCTTAGACGACGTCGATGTGGAGGGAAAAGTGGTGGTCTGCGACATAGGTGGAGGATTTTCAAGTGTAGACAAAGGACAAGTAGTTCTGGACGCTGGTGGCGCTGCCATGATTCTCGCCAACCCAGAACGTTTGGGCTTCAGTACTTTCGCTGTTGCTCATGTTTTGCCTGCAGTGGAAGTTAGTTACCTTGCTGGGTTGGCCATAAAGTCTTACATAAACTCAACTACCTCACCAAATGCAACAATCTCGTTCCAAGGAACCGTGATTGGTGATGCACTTGCTCCCGCAGTTGTTTCATTTTCTTCAAGGGGTCCAAGCCAGGCTAGTCCTGGGATTCTGAAACCCGACATTGTTGGACCAGGAGTGAACATTTTAGCTGCATGGGCTATCTCTGTAGACAACAAATTCCCACCATACAATATTGTTTCAGGAACATCAATGTCTTGTCCTCACCTTAGTGGTATTGCTGCATTGCTCAAAAGTGCACACCCTGATTGGTCTCCTGCGGCTATCAAATCAGCAATTATGACCACTGCCCACACACTCAACCTCGGAGGAAAACCCATATTGGACCAGAGGCTTCTTCCTGCTGACATATTTGCCACCGGTGCAGGCCATGTTAACCCTAACAAAGCGAATGATCCGGGGCTTGTTTATGATATTCAGCCAGATGATTACATTCCCTATTTGTGTGGCTTAGGTTATGATGATAGAGAAATAGGAATTATTGTGCAAAAGAGAGTGAGATGCAGCGGTGTAACAGTCGTACCAGAAGCACAACTGAATTACCCTTCGTTTTCTATTGTGCTGGGGTCAACTACACAGGATTACACCAGAACATTGACGAACGTTGGACCTGCAGAGGCAACTTACGTGGTGGATCTTGAAGTTCCTCTGGCGACGGGGATGAGCGTGAACCCTAGTCAGATAACATTCACGCAGGTGAAGCAGAAGGTTACATTCTCTGTGGAGTTTATCCCACAGGAAAAGGAAAATAGGGGCAACCATAGTTTTGCTCAGGGTTCTCTTACCTGGATCAGGGTGTCTGACAAACACACCGTTAGAATCCCCATATCGGTTATTTTCGAGTGA 2238 0.4718 MEKSKYVMELAFLLGLIFMLGTNASSSAKDHGNNLQTYIVHVKRVESRPTLESEELHNWYHSFLPETSKKDRMVFSYRNVASGFAVKLTPEEAKALLEKDEIVSARPERTLSLHTTHTPSFLGLPQGGLWNSSNLGQGVIIGVIDTGIYPFHPSFNDEGMPPPPSKWNGHCEFTGQRTCNNKLIGARNLVKSAAEEPPFENFFHGTHTSAEAAGRFVENASVFGNARGTAAGMAPHAHLAMYKVCNNQVGCTESAILAAMDIAIDDGVDVLSLSLGLGSLPFFEDPIAIGAFAAIQNGVFVSCSAANAGPDYATLSNEAPWILTVGASTIDRKIAASAVLGNGAEYAGESLFQPQDFSPTLLPLVYPGANGNLSTGFCLPDSLDDVDVEGKVVVCDIGGGFSSVDKGQVVLDAGGAAMILANPERLGFSTFAVAHVLPAVEVSYLAGLAIKSYINSTTSPNATISFQGTVIGDALAPAVVSFSSRGPSQASPGILKPDIVGPGVNILAAWAISVDNKFPPYNIVSGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTAHTLNLGGKPILDQRLLPADIFATGAGHVNPNKANDPGLVYDIQPDDYIPYLCGLGYDDREIGIIVQKRVRCSGVTVVPEAQLNYPSFSIVLGSTTQDYTRTLTNVGPAEATYVVDLEVPLATGMSVNPSQITFTQVKQKVTFSVEFIPQEKENRGNHSFAQGSLTWIRVSDKHTVRIPISVIFE 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4154g00020 745 ProSiteProfiles Serine proteases, subtilase domain profile. 110 595 - -
Vium4154g00020 745 Gene3D - 612 743 - -
Vium4154g00020 745 Pfam Subtilase family 136 568 IPR000209 GO:0006508|GO:0008236
Vium4154g00020 745 PRINTS Subtilisin serine protease family (S8) signature 136 155 IPR015500 -
Vium4154g00020 745 PRINTS Subtilisin serine protease family (S8) signature 200 213 IPR015500 -
Vium4154g00020 745 PRINTS Subtilisin serine protease family (S8) signature 525 541 IPR015500 -
Vium4154g00020 745 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 38 742 IPR045051 -
Vium4154g00020 745 CDD PA_subtilisin_like 339 464 - -
Vium4154g00020 745 SUPERFAMILY Subtilisin-like 113 599 IPR036852 GO:0004252|GO:0006508
Vium4154g00020 745 Gene3D - 331 471 - -
Vium4154g00020 745 Pfam PA domain 363 450 IPR003137 -
Vium4154g00020 745 Gene3D Peptidase S8/S53 domain 138 608 IPR036852 GO:0004252|GO:0006508
Vium4154g00020 745 FunFam subtilisin-like protease SBT1.5 331 471 - -
Vium4154g00020 745 Pfam Peptidase inhibitor I9 37 114 IPR010259 -
Vium4154g00020 745 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 141 152 IPR023827 -
Vium4154g00020 745 CDD Peptidases_S8_3 113 562 IPR034197 -
Vium4154g00020 745 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 114 IPR037045 -
Vium4154g00020 745 Pfam Fibronectin type-III domain 642 742 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4154g00020 Vium-Chr4154 124658 126900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4154g00020 12 745 Subtilisin-like Serine Gene Family AT1G04110 43.646 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4154g00020 - - gmx:100783595 1282.7