Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4154g00007 ATGGATCCTATAACATCACACGCCCATTCTCTTTCACCTCCTTTCCACGCGGCAAGAGATCTCCACCTGCACCACCAACACCAGTTTCACTCCTTACAACAAAACACCGAAGACGAGCAAAGCAGAAGCAGCGGAGGCCTAAACATGGCTCACAAAAGAGAACGCGAAGAAAACAACACCACCAACAGCAATAACAGTGATGGAAAAGAAGGAGGAGCTGGCGGCTCCGGCGAAACCGAGATGTCAAGAAGACCTCGCGGAAGACCCGCCGGATCCAAGAACAAGCCCAAACCCCCCATCATCATCACGCGCGACAGCGCCAACGCTCTCAAAACGCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGAGAGCGTCTCCACATTCGCACGCCGCCGCCAGAGAGGCGTTTGCATCATGAGCGGCACCGGAACCGTCACCAATGTCACCCTACGCCAACCCGCTTCTTCCGGCGCCATCGTCACGCTCCACGGCAGGTTCGAGATCTTGTCCCTTGCCGGATCCTTCCTCCCACCTCCGGCGCCGCCCGCCGCTACCGGTTTGACGATATATCTGGCTGGAGGACAAGGGCAGGTAGTAGGAGGAAGCGTGGTTGGCGCACTAATTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTCAGCAACGCTGCGTATGAGAGACTTCCGTTGGAAGACGAAGACCCTTCGATGCCGCTTCAGGGAGGTTCGATTGGGTCACCAGGCGGCGGCAACGGCGGGGTGGGTCAAGCGCAGACACCTCAGCCGCTTCTGGGGGATTCAACTGCTCCTCTTTTTCACGGCTTTAATCCGAATCTTCTGAATTCCGTTCAGATGCCTTCGGAAACGTTCTGGGCAACGGGTCGCTCTCCTTACTGA 903 0.5714 MDPITSHAHSLSPPFHAARDLHLHHQHQFHSLQQNTEDEQSRSSGGLNMAHKREREENNTTNSNNSDGKEGGAGGSGETEMSRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSTFARRRQRGVCIMSGTGTVTNVTLRQPASSGAIVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSMPLQGGSIGSPGGGNGGVGQAQTPQPLLGDSTAPLFHGFNPNLLNSVQMPSETFWATGRSPY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4154g00007 300 CDD DUF296 111 194 IPR005175 -
Vium4154g00007 300 MobiDBLite consensus disorder prediction 27 101 - -
Vium4154g00007 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 236 - -
Vium4154g00007 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 224 IPR005175 -
Vium4154g00007 300 MobiDBLite consensus disorder prediction 234 270 - -
Vium4154g00007 300 PIRSF ESCAROLA 17 299 IPR014476 GO:0003680
Vium4154g00007 300 FunFam AT-hook motif nuclear-localized protein 110 237 - -
Vium4154g00007 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 267 IPR014476 GO:0003680
Vium4154g00007 300 ProSiteProfiles PPC domain profile profile. 107 244 IPR005175 -
Vium4154g00007 300 MobiDBLite consensus disorder prediction 28 47 - -
Vium4154g00007 300 Gene3D - 110 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4154g00007 Vium-Chr4154 56294 58333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4154g00007 1 300 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.070 7.33e-85 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4154g00007 - - gmx:100781436 444.506