Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4154g00007 | ATGGATCCTATAACATCACACGCCCATTCTCTTTCACCTCCTTTCCACGCGGCAAGAGATCTCCACCTGCACCACCAACACCAGTTTCACTCCTTACAACAAAACACCGAAGACGAGCAAAGCAGAAGCAGCGGAGGCCTAAACATGGCTCACAAAAGAGAACGCGAAGAAAACAACACCACCAACAGCAATAACAGTGATGGAAAAGAAGGAGGAGCTGGCGGCTCCGGCGAAACCGAGATGTCAAGAAGACCTCGCGGAAGACCCGCCGGATCCAAGAACAAGCCCAAACCCCCCATCATCATCACGCGCGACAGCGCCAACGCTCTCAAAACGCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGAGAGCGTCTCCACATTCGCACGCCGCCGCCAGAGAGGCGTTTGCATCATGAGCGGCACCGGAACCGTCACCAATGTCACCCTACGCCAACCCGCTTCTTCCGGCGCCATCGTCACGCTCCACGGCAGGTTCGAGATCTTGTCCCTTGCCGGATCCTTCCTCCCACCTCCGGCGCCGCCCGCCGCTACCGGTTTGACGATATATCTGGCTGGAGGACAAGGGCAGGTAGTAGGAGGAAGCGTGGTTGGCGCACTAATTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTCAGCAACGCTGCGTATGAGAGACTTCCGTTGGAAGACGAAGACCCTTCGATGCCGCTTCAGGGAGGTTCGATTGGGTCACCAGGCGGCGGCAACGGCGGGGTGGGTCAAGCGCAGACACCTCAGCCGCTTCTGGGGGATTCAACTGCTCCTCTTTTTCACGGCTTTAATCCGAATCTTCTGAATTCCGTTCAGATGCCTTCGGAAACGTTCTGGGCAACGGGTCGCTCTCCTTACTGA | 903 | 0.5714 | MDPITSHAHSLSPPFHAARDLHLHHQHQFHSLQQNTEDEQSRSSGGLNMAHKREREENNTTNSNNSDGKEGGAGGSGETEMSRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSTFARRRQRGVCIMSGTGTVTNVTLRQPASSGAIVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSMPLQGGSIGSPGGGNGGVGQAQTPQPLLGDSTAPLFHGFNPNLLNSVQMPSETFWATGRSPY | 300 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4154g00007 | 300 | CDD | DUF296 | 111 | 194 | IPR005175 | - | |
Vium4154g00007 | 300 | MobiDBLite | consensus disorder prediction | 27 | 101 | - | - | |
Vium4154g00007 | 300 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 107 | 236 | - | - | |
Vium4154g00007 | 300 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 111 | 224 | IPR005175 | - | |
Vium4154g00007 | 300 | MobiDBLite | consensus disorder prediction | 234 | 270 | - | - | |
Vium4154g00007 | 300 | PIRSF | ESCAROLA | 17 | 299 | IPR014476 | GO:0003680 | |
Vium4154g00007 | 300 | FunFam | AT-hook motif nuclear-localized protein | 110 | 237 | - | - | |
Vium4154g00007 | 300 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 42 | 267 | IPR014476 | GO:0003680 | |
Vium4154g00007 | 300 | ProSiteProfiles | PPC domain profile profile. | 107 | 244 | IPR005175 | - | |
Vium4154g00007 | 300 | MobiDBLite | consensus disorder prediction | 28 | 47 | - | - | |
Vium4154g00007 | 300 | Gene3D | - | 110 | 238 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4154g00007 | Vium-Chr4154 | 56294 | 58333 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4154g00007 | 1 | 300 | AT-hook Motif Nuclear Localized (AHL) Family | AT4G22810 | 54.070 | 7.33e-85 | 256 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4154g00007 | - | - | gmx:100781436 | 444.506 |